Sequence
atgc intronic sequence ATGC exonic sequenceCAATAATTGTATTTATCTGTGGGAGCCTACATCTGCTGGAACGTGGAATGTTGATAATGCTCCATTTATTGGACATACTGCTAGTGTTGAAGATCTGCAAgtatgtttactaatatgcaaagcaatagttcttcacttcttgtagtttcagtatagttagtatatttttgttccgtacactctattatgactagtttatccttatttttaaatctaattagatttgtaatgttcaattaatccctgcag
Basic information
species | Glycine max |
transcript | GLYMA08G11020.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G11020.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 8
---CAATAATTGTATTTATCTGTGGGAGCCTACATCTGCTGGAACGTGGAATGTTGATAATGCTCCATTTATTGGACATACTGCTAGTGTTGAAGATCTGCAAgtatgtttactaatatgcaaagcaatagttcttcacttcttgtagtttcagtatagttagtatatttttgttccgtacactctattatgactagtttatccttatttttaaatctaattagatttgtaatgttcaattaatccctgcag
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CTGCAATAAGTGCATTCACCTATGGGAACCGACTTCAAAT--AAC-TGGAACGTAGATGCAAACCCATTTGTTGGACACACTGCTAGTGTTGAAGATCTACAGgcatgcc-actggatgatgtatc--tacctattcatatgtttcg--ttgaatgtgattgtctcaactttaatcactatatccttgcag-------------------------------------------------------------
upper sequence: GLYMA08G11020.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 7
CAATAATTGTATTTATCTGTGGGAGCCTACATCTGCTGGAACGTGGAATGTTGATAATGCTCCATTTATTGGACATACTGCTAGTGTTGAAGATCTGCAAgtatgtttactaatatgcaaagcaatagttcttcacttcttgtagtttcagtatagttagtatatttttgt-tccgtacact-----ctattatgactagtttatccttatttttaaatctaattagatttgtaatgttcaattaatccctgcag
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CAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACATGGAAAGTTGATACAAATCCATTTATTGGACATACTGCTAGCGTGGAAGATCTACAAgtatgtat-ctaattggtgaagcaatagttgtat-ctgtttgaattttgagtatttagagtctgatcttatgttcctatatgggtggctttcttaaaatgtttaatcttctaagcaattctt-ctccccccccaaaat---atttaccaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11273936|gb|BF324324.1|BF324324EST: TTGATAATGCTCCATTTATTGGACATACTGCTAGTGTTGAAGATCTGCAA TGGAGCCCTACAGAATCTCATGTTTTTGCTTCTTGTTCTGTGGATGGAAAC
genomic: TTGATAATGCTCCATTTATTGGACATACTGCTAGTGTTGAAGATCTGCAAgtatgtttac ... atccctgcagTGGAGCCCTACAGAATCTCATGTTTTTGCTTCTTGTTCTGTGGATGGAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATAATTGTATTTATCTGTGGGAGCCTACATCTGCTGGAACGTGGAATGTTGATAATGCTCCATTTATTGGACATACTGCTAGTGTTGAAGATCTGCAAgtatgtttactaatatgcaaagcaatagttcttcacttcttgtagtttcagtatagttagtatatttttgttccgtacactctattatgactagtttatccttatttttaaatctaattagatttgtaatgttcaattaatccctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA