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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcag

Basic information

species Glycine max
transcript GLYMA08G08730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g44040.2 (Oryza sativa), 5'ss of exon 7
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatac-ctaactcgttaaaatttcttgcag
||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||| |  ||||| ||||| ||| |  | |||||||||||   | ||  ||| ||| ||  ||| | || | ||  || ||       | ||   | ||   ||| |  |  ||  ||  |   | ||| || ||      |  | |  |||||
AATTCGTGTTTTCATTGCTGCCTATGTCTGGATGACTGGATTTGGGAACTTCTCATACTATTATATTAAGAAAGACTTTAGTCTTGCCAGATTTGCTCAGgtgccattc--tgatctttaaccccaatctgttctatatgatac------tttagtatgttttcatttccttgatttaatgcatggtttacactgacaaccatatttctaatgcag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 7
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcag
||| || || ||||||||||| ||||| |||||||||||||| || || ||||| |||||||||||||  |||||||||||| || || | ||||| |||||     || | | ||    || | || ||| ||             ||  |  |   |||  | | ||  | || |   ||| | || |    |    |||||      |||||
AATTCGGGTGTTCATTGCTGCCTATGTCTGGATGACTGGATTCGGGAATTTCTCATATTATTATATCAAGAAAGATTTTAGCATTGCAAGATTTGCACAGgtttccatcctagcccaattatccaatgttgtttc------------ttaccccttgatttgttgtaaccatcttag---aaatactaaagaccatcttttaaa------tgcag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaataccattttgcttta---cttggtatccattgtctatcct-tttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcag
||| ||||| |||||||||   ||||| ||||||||||||||||| || ||||||||||| |||||||  |||||||||||  || || | ||||| |||||     |  |    | | | |   |||||    ||   | |  |     | ||||    | |||| | ||||    |||   ||| || || ||| |  |   || | ||||  |||||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCGCAGgtgcctatgctacctcatcagtcttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagaccaa--taactatactttccatgcag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: AC218988.3_FGT003 (Zea mays), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaataccattttgcttta---cttggtatccattgtctatcct-tttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcag
|||  |||| |||||||||   ||||| ||||||||||||||||| || ||||||||||| |||||||  |||||||||||  || || | |||||||||||     |  |    | | | |   ||||||   ||   | |  |     | ||||    | |||  | ||||    |||   ||| || || ||| |  |   || | ||||  |||||
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgtctatgctacctcatcagtcttattttgtgctatgccctaatgagtttagtctcctgtattttttgttaccgccttt---taagcactagaccaa--taactatactttccatgcag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: AC208418.3_FGT009 (Zea mays), 5'ss of exon 3
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaataccattttgctttacttggtatcca-ttgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcag
|||  |||| |||||||||   ||||| ||||||||||||||||| || ||||||||||| |||||||  |||||||||||  || || | |||||||||||     |  |    | | | |   ||||||   ||  |  ||   | ||   | |||| |   | ||  |         ||| || || ||| |  |   || | ||||  |||||
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgtctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtattttttgttaccgccttttaagcactagaccaa--taactatactttccatgcag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G147351_T01 (Zea mays), 5'ss of exon 1
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaataccattttgcttta---cttggtatccattgtctatcct-tttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcag
||| ||||| |||||||||   ||||| ||||||||||||||||| || ||||| ||||| |||||||  |||||||||||  || || | |||||||||||     |  |    | | | |   ||||||   ||   | |  |     | ||||    | |||| | ||||    |||   ||| || || ||| |  |   || | ||||  |||||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagaccaa--taactatactttccatgcag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaataccattttgcttta---cttggtatccattgtctatcct-tttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcag
||| ||||| |||||||||   ||||| ||||||||||||||||| || ||||| ||||| |||||||  |||||||||||  || || | |||||||||||     |  |    | | | |   ||||||   ||   | |  |     | ||||    | |||| | ||||    |||   ||| || || | | |  |   || | ||||  |||||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagaacaa--taactatactttccatgcag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaataccattttgcttta---cttggtatccattgtctatcct-tttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcag
||| ||||| |||||||||   ||||| ||||||||| ||||||| || ||||||||||| |||||||  |||||||||||  || || | |||||||||||     |  |    | | | |   ||||||   ||   | |  |     | ||||    | |||| | ||||    |||   ||| || || ||| |  |   || | ||||  || ||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTAGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagaccaa--taactatactttccatgtag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 8
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaa---gagtcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcag
||| ||| | || |||||||| ||||||||||||||||| |||||||||||||| || || ||| ||||||| |||||     || |||||||||| ||||| |    | |||||   |  |||   |   |   | |||||| ||  |    ||||   | ||     | |||||   |                                      
AATCCGTATCTTTATTGCTGCTTATGTTTGGATGACTGGTTTTGGAAACTTCTCTTACTACTATGTCAGAAAGGATTTCTCTGTTGCACGTTTTGCGCAGgtgatacaattcattccacaaaaagctctcgtcattgtacttgataatccgcatctaaaatctt---ggttctcttgcag--------------------------------------

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgacc--ttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcag
|||  | |||||||||||||| || || ||||||||||| ||||| |||||||| ||||| ||||||||||| |||||   |||  |||| ||| ||||||| |     ||||  |  |||| ||           ||  || |    |  | |      ||| | || ||||    ||| | |  || |    ||  || |  |            
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgc-tcatgaaaacttttacttcttccag-----------

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaa---taccatt-ttgctttacttggtatc-cattgt--ctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcag
||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||| ||| | ||||| |   |  || |   | ||   |  |||  || || || | |   |   |||||  || | | ||| ||||   ||  |||  ||||   |   |  | | || |||   | |  |||||
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgacc-ttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttagg-atgtgaatctttactttctaatgcag