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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGACTGACTGTGAGGTGGACTTTGCTCCTCCCTTGGATTACAAGGAACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcacttgacttacttatgtttgtcacagatgtctcttttctctgtctggtcggatgaaatctctctctctctctctctgtgacatgtttctgtata...

Basic information

species Glycine max
transcript GLYMA08G05030.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05030.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os04g48770.2 (Oryza sativa), 5'ss of exon 4
ATTGAGACTGACTGTGAGGTGGACTTTGCTCCTCCCTTGGATTACAAGGAACCTGAAAAACC-CATTG--CACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcacttgacttacttatgtttgtcacagatgtctcttttctctgtctggtcggatgaaatctctctctctctctctctgtgacatgtttctgtata----
   ||||| |||||||| ||||||||||| |||||  | |||||||| ||||||||||| || ||     || |  || ||||  |  ||||| | |  |  ||| ||   ||   |||  |    ||     || | ||   |     ||| | |   |    ||| |    |||    ||| |   |  | ||   || |     
---GAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGgtttgtctttagattaagtgcactt----tagttttcagatgaacttgtattgaaaggctgaattttatcctcctcttctatagcaatttttcaagtgtgctgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318175|gb|GR832343.1|GR832343
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|151397988|gb|EV267861.1|EV267861
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|254318174|gb|GR832342.1|GR832342
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|214004575|gb|DB985590.1|DB985590
EST:     CGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: CGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|9563895|gb|BE473404.1|BE473404
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|254326847|gb|GR836456.1|GR836456
EST:     TGAAAAACCCATTGCA-CCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGGAGA-CCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGA
genomic: TGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGA-GGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGA
EST: gi|254313715|gb|GR831344.1|GR831344
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|209716429|gb|BW653870.1|BW653870
EST:     CCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: CCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|16348528|gb|BI974123.1|BI974123
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|192326508|gb|FK018815.1|FK018815
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|254313714|gb|GR831343.1|GR831343
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAG-CAGCAGTG-CTG                         CTGAG-AGACCCCTGCTGAAGAGGAGCCCA-GT-CA-CCCATTTTCTG
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTG
EST: gi|9439750|gb|BE440264.1|BE440264
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|6667020|gb|AW278479.1|AW278479
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|9900177|gb|BE609145.1|BE609145
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|7028303|gb|AW458086.1|AW458086
EST:     GAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: GAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
EST: gi|58023681|gb|CX710422.1|CX710422
EST:     ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTG                         CTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA
genomic: ACCTGAAAAACCCATTGCACCCCTTTCTGCCGGAAAGGCAGCAGTGGCTGgtatgcactt ... ctgctcacagCTGAGGAGACCCCTGCTGAAGAGGAGCCCAAGTTCAACCCATTTTCTGGAA