Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttggttgcatctttaacttgttgttttgcttaattcaaccatatttcatctttaacttgtgtgatgcaatttggctattag

Basic information

species Glycine max
transcript GLYMA08G02550.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193641318|gb|FK588980.1|FK588980
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208173760|gb|GD968995.1|GD968995
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208189048|gb|GD986028.1|GD986028
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208149773|gb|GD949779.1|GD949779
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193630116|gb|FK581309.1|FK581309
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208025862|gb|GD824344.1|GD824344
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193411107|gb|FK377654.1|FK377654
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208227060|gb|GE027283.1|GE027283
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208290457|gb|GE087603.1|GE087603
EST:     CCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208271236|gb|GE066198.1|GE066198
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208282807|gb|GE076005.1|GE076005
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208266947|gb|GE062328.1|GE062328
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193378619|gb|FK344274.1|FK344274
EST:     ATTGAAGTGGAAG                         GAACTTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGC
genomic: ATTGAAGTGGAAGgttagtgttg ... tggctattagGAAC-TGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGC
EST: gi|208248785|gb|GE046298.1|GE046298
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208163135|gb|GD964371.1|GD964371
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193705152|gb|FK644054.1|FK644054
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|207689579|gb|GD671972.1|GD671972
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208096401|gb|GD893788.1|GD893788
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193447682|gb|FK415431.1|FK415431
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|207680543|gb|GD663989.1|GD663989
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193375317|gb|FK342523.1|FK342523
EST:     ACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: ACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193717715|gb|FK652945.1|FK652945
EST:     CAGGAATCAGCACCTCAACCCTTAATGCAC-TGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208320133|gb|GE122890.1|GE122890
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193514807|gb|FK469667.1|FK469667
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193368882|gb|FK335248.1|FK335248
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGACAGACGATTCTGGAAATGGACCAAGCATCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAA-TGG-CCAAGCATCA
EST: gi|207732761|gb|GD712218.1|GD712218
EST:     AGGAATCGGCACCTCAACCCTTAACTGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGACATCAAAAGC
genomic: AGGAATCAGCACCTCAACCCTTAA-TGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAG-CATCAAAAGC
EST: gi|193547439|gb|FK501936.1|FK501936
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATACAAAAGC
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCAT-CAAAAGC
EST: gi|193514195|gb|FK466997.1|FK466997
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193482036|gb|FK447883.1|FK447883
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCGTCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193519997|gb|FK474152.1|FK474152
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208147578|gb|GD951531.1|GD951531
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193651583|gb|FK594670.1|FK594670
EST:     CAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208302476|gb|GE098365.1|GE098365
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208090356|gb|GD887379.1|GD887379
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193550127|gb|FK510160.1|FK510160
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|207749297|gb|GD720883.1|GD720883
EST:     AGGAATCAGCACCTCAACCCTTAAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: AGGAATCAGCACCTCAACCCTT-AATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208193441|gb|GD991556.1|GD991556
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208157072|gb|GD958124.1|GD958124
EST:     CCTTAATGCACTTTGTTTTCATTGAAGTGG-AG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CCTTAATGCAC-TTG-TTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193576538|gb|FK533677.1|FK533677
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208262987|gb|GE062449.1|GE062449
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208152661|gb|GD950914.1|GD950914
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208222115|gb|GE019951.1|GE019951
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCA
EST: gi|208026016|gb|GD825226.1|GD825226
EST:     TGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: TGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193307640|gb|FK269310.1|FK269310
EST:     ATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: ATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193390538|gb|FK354134.1|FK354134
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193693966|gb|FK629110.1|FK629110
EST:     CAGGAATCAGCACCTCAGCCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193321902|gb|FK287424.1|FK287424
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGACAGACGATTCTGGAATGGCCAAGCATCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCA
EST: gi|193529626|gb|FK484859.1|FK484859
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAG
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAG
EST: gi|208162493|gb|GD963182.1|GD963182
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAG
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAG
EST: gi|208197011|gb|GE001075.1|GE001075
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193352512|gb|FK315886.1|FK315886
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|207817844|gb|GD791849.1|GD791849
EST:     CAGGAATCAGCACCTCAACTCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208076405|gb|GD874326.1|GD874326
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193691235|gb|FK627490.1|FK627490
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208266456|gb|GE062761.1|GE062761
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|207684472|gb|GD665145.1|GD665145
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193453432|gb|FK417262.1|FK417262
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208173057|gb|GD967588.1|GD967588
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAG
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAG
EST: gi|208296750|gb|GE095674.1|GE095674
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAAGACGAGGAAGATAGACAATTCTGGAATGGCCAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGA-G-CGAGGAAGATAGACAATTCTGGAATGGCCAAGCA
EST: gi|208185394|gb|GD987536.1|GD987536
EST:     CCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193731262|gb|FK664850.1|FK664850
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193332214|gb|FK300296.1|FK300296
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193585137|gb|FK540706.1|FK540706
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|207821175|gb|GD792998.1|GD792998
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|193639347|gb|FK586134.1|FK586134
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208127020|gb|GD922596.1|GD922596
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
EST: gi|208162323|gb|GD963096.1|GD963096
EST:     CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAG                         GAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA
genomic: CAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttg ... tggctattagGAACTGAGCGAGGAAGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAGCACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGgttagtgttggttgcatctttaacttgttgttttgcttaattcaaccatatttcatctttaacttgtgtgatgcaatttggctattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG