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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAGTTATTGTTCTTGAGAGGGAGAGCAGTTATATAGGAACATTAATTGATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAGgtaaactaaccaagataacatttctgctcatagatgcatatatgctgcttcatcctgttactccttattcctttcttgttatttaaattgaaatttgtcttcctcatgttag

Basic information

species Glycine max
transcript GLYMA08G00380.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00380.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G481548_T01 (Zea mays), 5'ss of exon 9
AGCCAGTTATTGTTCTTGAGAGGGAGAGCAGTTATATAGGAACATTAATTGATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAGgtaaactaaccaag-ataacat-ttctgctcatagatgcatatatgctgcttcatcctgttactccttattcctttcttgttatttaaattgaaatttgtcttcctcatgttag
|  || | ||| ||||||||||||| |||||||||||||||||  | ||||||||||| || || || || ||  ||||||| || ||| || |||| |||||    |    || |||| |  || |  | || ||||| || ||  | ||          |  |||| ||    |  |  |  |  |||  | | |   |             
AATCATTAATTATTCTTGAGAGGGAAAGCAGTTATATAGGAACTCTTATTGATGATCTTGTTACAAAAGATCTTAGAGAGCCCTATCGCATGCTAACAAGgtatggaattttagtataagacatttttattattgatgcttaaat--tactggcgttgaaaatacctttttttacttctacttctacaatatatagtaagcc------------

upper sequence: GLYMA08G00380.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G440344_T01 (Zea mays), 5'ss of exon 3
AGCCAGTTATTGTTCTTGAGAGGGAGAGCAGTTATATAGGAACATTAATTGATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAGgtaaactaaccaag-ataacat-ttctgctcatagatgcatatat-gctgc--ttcatcctgttactccttattcct-ttcttgttatttaaattgaaatttgtcttcctcatgttag
|  || | ||| ||||||||||||| ||||||||||||| |||  | ||||||||||| || || || || ||  ||||||| || ||| || |||| |||||    |    || |||| |  || |  | || ||||| || ||  |||   || |   |     |  ||| | ||  |  |   || || || | ||                   
AATCATTAATTATTCTTGAGAGGGAAAGCAGTTATATAGAAACTCTTATTGATGATCTTGTTACAAAAGATCTTAGAGAGCCCTATCGCATGCTAACAAGgtatggaattttagtataagacatttttattattgatgcttaaattactggcgttgaaaatacctttttttacttctacttctacaatatatatagtaag------------------

upper sequence: GLYMA08G00380.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G13440.1 (Arabidopsis thaliana), 5'ss of exon 9
AGCCAGTTATTGTTCTTGAGAGGGAGAGCAGTTATATAGGAACATTAATTGATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAGgtaaactaaccaagataacatttctgctcatagatgcatatatgctgcttcatcctgttactccttattcctttctt-gttatttaaattgaaatttgtcttcctcatgttag
||  |    |||||||||||||||| |||||||||||||| || || ||||||||| |||| || ||||| ||  ||||||| |||||| || |||| ||||||  |   | |  |     |  || ||||      |  | | |||| |  |  | |   | | |  ||  | ||    | |      |||||| ||               
AGAAACACGTTGTTCTTGAGAGGGAAAGCAGTTATATAGGTACGTTGATTGATGATTTAGTCACAAAGGATCTCAGAGAGCCATACCGCATGCTAACAAGgtaagtt---ccatttcgttctcttgttcattatcctaattctcctgcattcttttatactttcatgatcaatcctccactctactttctgaaatatggtcag----------

upper sequence: GLYMA08G00380.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0044g01690.t01 (Vitis vinifera), 5'ss of exon 9
AGCCAGTTATTGTTCTTGAGAGGGAGAGCAGTTATATAGGAACATTAATTGATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAGgtaaactaaccaagataacatttctgctcatagatgcatatatgctgcttcatcctgttactccttattcctttcttgttatttaaattgaaatttgtcttcctcatgttag----
|  |  | ||||||||||||||||| |||||||| ||||| || || || |||||||| || ||||| ||||| ||||||||||| ||  ||||||| ||||||  |    || ||| |  ||     |||| ||    ||||  |      |  ||  | |   ||          | ||   |||| | | | ||    |||  | ||||    
AATCCCTCATTGTTCTTGAGAGGGAAAGCAGTTACATAGGGACTTTGATAGATGATCTGGTTACCAAAGACCTTCGAGAGCCTTATCGAATGTTAACAAGgtaatgtggaaaacatatcgctta----cataaatcttgatatagtagggtcttttggaagttggta----------gataaa-aaatagtagtgtgcacacctt-ttttagtata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5687882|gb|AI940861.1|AI940861
EST:     ATGATCTAGTTACCAATGACCTGCGAGAAGCCTTAC-GCGTGTTAACCAG                         CCGGTCAGAGCATCG-TTACCTCTTG
genomic: ATGATCTAGTAACCAAGGACCTGCGAGA-GCCTTACCGCGTGTTAACCAGgtaaactaac ... ctcatgttagCCGCTCAGAGCATCGGTTAC-TCTTG
EST: gi|5760607|gb|AI965970.1|AI965970
EST:     GATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAG                         CCGCTCAGAGCATCGGTTACTCTTGAGATCTGACAATGCTGATAGCCGTCT
genomic: GATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAGgtaaactaac ... ctcatgttagCCGCTCAGAGCATCGGTTACTCTTGAGATCTGACAATGCTGATAGCCGTCT
EST: gi|7639325|gb|AW733650.1|AW733650
EST:     GATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAG                         CCGCTCAGAGCATCGGTTACTCTTGAGATCTGACAATGCTGATAGCCGTCT
genomic: GATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAGgtaaactaac ... ctcatgttagCCGCTCAGAGCATCGGTTACTCTTGAGATCTGACAATGCTGATAGCCGTCT
EST: gi|16996254|gb|BM085626.1|BM085626
EST:     GATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAG                         CCGCTCAGAGCATCGGTTACTCTTGAGATCTGACAATGCTGATAGCCGTCT
genomic: GATGATCTAGTAACCAAGGACCTGCGAGAGCCTTACCGCGTGTTAACCAGgtaaactaac ... ctcatgttagCCGCTCAGAGCATCGGTTACTCTTGAGATCTGACAATGCTGATAGCCGTCT
EST: gi|14990848|gb|BI316521.1|BI316521
EST:     GAGAGCCTTACCGCGTGTTAACCAG                         CCGCTCAGAGCATCGGTTACTCTTGAGATCTGACAATGCTGATAGCCGTCT
genomic: GAGAGCCTTACCGCGTGTTAACCAGgtaaactaac ... ctcatgttagCCGCTCAGAGCATCGGTTACTCTTGAGATCTGACAATGCTGATAGCCGTCT