Sequence
atgc intronic sequence ATGC exonic sequenceCCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGgtactgattattatatagcaaaatcttaggctttttcctttggttcacttcatccattaatatattttatataaatacagaaatatgcactgagattacattgatattgcaaagcttgtttgttaagtgctacaaattaatttaatttag
Basic information
species | Glycine max |
transcript | GLYMA07G38820.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G38820.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G19220.1 (Arabidopsis thaliana), 5'ss of exon 8
CCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGgta---ctgattattatatagcaaaatcttaggctttttcctttggttcacttcatccattaatatattttatataaatacagaaatatgcactgagattacattgatattgcaaagcttgtttgttaagtgctacaaattaatttaatttag
| |||| || ||||| ||||| || ||| |||||||||||||||| ||||| |||||||| || || ||||| || || ||||| | ||||| |||||||| | | | || || | | | ||| || | || | | || ||||| || | | | ||||| |
CTATTTTAGGACTTTCCAAGGAGGAAGCTGAAAAGAAACCATACATAGCTTCAATGGGAGTTTATGTTTTCAAAAAAGAAATACTGTTAAATCTCTTGAGgtaacaccgttagttctactgtatattctgttactgcattctaagaacaatgcagaaca--aatatcttgca-actgtttttgaaatcag---------------------------------------------------------------
upper sequence: GLYMA07G38820.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 8
CCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGgtactgattattatatagcaaaatcttaggctttttcctttggttcacttcatccattaatatattttatat-aaatacagaaatatgcactgagattacattgatattgcaaagcttgtttgttaagtgctacaaattaatttaatttag
|| ||||| || |||| ||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || ||||||| |||| | | | | || ||| || | || || || |||| ||||| ||| | | ||||| |
AAGTCTTGGGACTCTCAAGGGAAGAGGCAGAAAAGAAGCCATACATTGCTTCCATGGGAGTGTATGTCTTCAAGAAGGAGATACTCCTGAATCTTTTAAGgtactaattaacac---------tttcaagccatttaagatgaaaaatgaagctttccggcatgcttaattccaaatgcagaagagactact-atttatcattgtgtgta-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11413026|gb|BF425046.1|BF425046EST: TCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAG ATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTC
genomic: TCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGgtactgatta ... tttaatttagATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGgtactgattattatatagcaaaatcttaggctttttcctttggttcacttcatccattaatatattttatataaatacagaaatatgcactgagattacattgatattgcaaagcttgtttgttaagtgctacaaattaatttaatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT