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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttctttgattgtttagggtctactgtgataaaatgttatataataatgttttcaatttctgtgcatgattaag

Basic information

species Glycine max
transcript GLYMA07G38050.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttctttgattgtttagggtctactgtgataa-aatgttatataata-atgttttcaatttctgtgcatgattaag-----
  | ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||  | || |||||||||||||| || || ||||| ||   |  | || |  || |   |   ||   | | || ||| ||| |   | ||      |  |  |||  |||  ||  ||        
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaat---ggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaa--gccttgaagcttctttgattgtttagggtctactgtgataaaatgttatataataatgttttcaatttctgtgcatgattaag
  | ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| || ||||||||  ||||||| |||||||| || || || |||||||  |  ||||      | |  |   ||  | |  |   || |    |    | ||  | |  | | |  |  |   | |||     
CTTGTTGCCTGAAATATTTAGCTCTGCTGAGACTTTTGATGATTGGTTCCAAATCTCAGGGGAAAATGATCAACATGAAGTTGTTCAGCAGCTTCATAAGgtaacagatttgatatccatattctcaatt--gatagatcatgttggttttccttgtatgatttgtgtaacatgttacacttgaag---

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttctt--tgattgtttagggtctactgtgataaaatgttatataataatgtttt-caatttctgtgcatgattaag
  |  | |||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||  |||| ||||| || || || || || |||||  |  |  ||   || |  | | |  |||  ||    |   || || | ||| |||||  | | || ||| || ||   |        
CTTGCTCCCTGAAATATTTAGCTCTGCGGAAACCTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAACAGGAGGTGGTCCAGCAGCTTCATAAGgttgggatataattatcatgataactaattatagtactttaaaatgaactctta-ataattgtttcttgcaacttttgcaaag-------

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 5
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttctt--tgattgtttagggtctactgtgataaaatgttatataataatgtttt-caatttctgtgcatgattaag
  |  | |||||||||||||| ||||| || || |||||||||||||||||||| ||||| ||||||||  |||| ||||| || || || || || |||||  |  |  |   ||| |  | |    ||   ||    |   || || | || ||||||  | | |  ||| || ||   |        
CTTGCTACCTGAAATATTTAGCTCTGCGGAGACCTTTGATGAATGGTTTCAAATATCTGGGGAAAATGATCAACAGGAGGTGGTGCAGCAGCTTCATAAGgttgggatatagttttcgtgatcaccaattttagtaccttaaaatgaactctt-tataattgtttctcgcaacttttgcaaag-------

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttctttgattgtttagggtctactgtgataaaatgttata-taataatgttttcaatttctgtgcatgattaag
|||| | |||||  | |||||||| || ||||||||||| || ||||||||||| ||||||||||| ||| | || || |||||||||||||| ||||||||| |   | |   ||       | |  ||| | | || |   ||  | ||||  |||| || |     || | |||           
TCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGTTTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGgtatgtactcatattt-------tatcaaggttattctct---aagttcttatgctaatcatttacctcatctttgtag---------

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagc-ttctttg-attgtttagggtctactgtgataaaatgttatataataatgttttcaatttctgtgcatgattaag
|||| ||||||| || |||||||| || || ||||||||||||||||||||||| |||||||| |||||| | || || ||||| |||||||| ||||||||| |  |  |  | ||| ||| ||||  |    |||  | ||    | |  ||  | | | || |||||     |||   |  |||  
TCTTCTGCCTGAGATTTTTAGTTCAGCAGAGACTTTTGATGAATGGTTTCAAATTTCTGGTGAGAATGACCAGCAAGAAGTTGTGCAACAACTGCACAAGgtatggatgcacccattccttgcattgagtttattctgttctgtgtgagtcgtaggtta-attgctttca-----tgtatctttttag-

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttctttgattgtttagggtctactgtgataaaatgttatataat--aatgttttcaatttctgtgcatgattaag
|||  |||| || ||||||| ||| ||||| ||||||||||||||||| ||||| ||||| || |||||| | || |||||||||||||| || || ||||||| ||   |||      | ||| |||||  |||||  | ||   || | || || |  |||| ||||  | | | ||  |  || ||
TCTACTGCCCGAGATATTTAATTCAGCTGAGACTTTTGATGAATGGTTCCAAATTTCTGGAGATAATGACCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtaaaccc--aagacctcctaattttttagc-tctacctt-atttcatctcatttactgaaatggtttctgtatttctgttt--tttag

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
lower sequence: EFJ32950 (Selaginella moellendorffii), 5'ss of exon 7
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttctttgattgtttagggtctactgtgataaaatgttatataataatgttttcaatttctgtgcatgattaag
|||  |||| || || || || ||||||||||| || || |||||||||||||| ||||| ||||| ||| | || || ||||| || || || ||||||||| |  |    |||      ||    ||  ||| |   ||||||    ||| |                                 
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaatgagcgct------atgcgctatcgtcgatgctgataatgatttacag--------------------------------

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
lower sequence: EFJ15818 (Selaginella moellendorffii), 5'ss of exon 7
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttctttgattgtttagggtctactgtgataaaatgttatataataatgttttcaatttctgtgcatgattaag
|||  |||| || || || || ||||||||||| || || |||||||||||||| ||||| ||||| ||| | || || ||||| || || || ||||||||| |  |    |||      ||    ||  ||| |   ||||||    || || |                               
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaatgagcgct------atgcgctatcgtcgatgctgataatg-attttacag------------------------------