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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAATATTGTTTGGTGGTGAGGATGCAAAAAGGAGGAAATTGAATGATCTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACgtaagggattaaaaagaaaaagttggacttagttgtgattatctaatcataatcacccaatatcctgatttttttactgcaatatcctgatgttatgttgcctttgaaattatattacttgcag

Basic information

species Glycine max
transcript GLYMA07G38020.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38020.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G070553_T01 (Zea mays), 5'ss of exon 9
TTTTAATATTGTTTGGTGGTGAGGATGCAAAAAGGAGGAAATTGAATGATCTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACgtaagggattaaaaagaaaaagttggacttagt----tgtgattatctaatcataatcacccaatatcctgatttttttactgcaatatcctgatgttatgttgcctttgaaattatattacttgcag
|||||||  | ||||| ||||| ||||| ||| ||| |||| |  |||| || |||||||| ||||| ||||| |||||||||||||| ||  |||| | |||||  |||  |    | || |      ||||    | | ||||   ||  |  |  |   |  ||   |  |  ||   | |    |  | || | |                             
TTTTAATTCTCTTTGGAGGTGAAGATGCCAAAGGGAAGAAACTACATGACCTTCATATGTTTGATCTGAAGTCATTAACATGGCTTCCTCTGAACTATAAgtaagctattctagtctagaattcaacgatagtgtaatatcattactaaagaaagaaaagaaagcatggaggctaattagtttcctcttggtcatttcac----------------------------

upper sequence: GLYMA07G38020.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
TTTTAATATTGTTTGGTGGTGAGGATGCAAAAAGGAGGAAATTGAATGATCTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACgtaag--ggattaaaaagaaaaagttggacttagttgtgat-tatctaatcataatcaccc------aatatcctga-tttttttactgcaatatcctgatgttatgttgcctt-tgaa--attatattacttgcag----------------
| |||||  | ||||| ||||| ||| | ||||| |||||| | ||||||||||||||||| ||||| ||||| || |||||||| || ||||| | ||||||||  || || |    |     ||| | ||     | || | | |||  ||  ||   |      |||||  ||| ||||||| ||  | |||    |||  || |  |||| ||||  ||||| | |  |   |                
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggtttcagtcaactgtattgaatttctcactaatatctttaaatattgtctttctactaaaatattttgaattttttttctttattat----atgccatatctccttatgaactattatctaagatttggggttatgtatgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207786213|gb|GD758620.1|GD758620
EST:     CTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACAC                         GGGAACAGCACCTTCTCCAAGATTCAACCATGTAGCTGCTCTTTATGATGA
genomic: CTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACgtaagggatt ... ttacttgcagGGGAACAGCACCTTCTCCAAGATTCAACCATGTAGCTGCTCTTTATGATGA
EST: gi|208182529|gb|GD980430.1|GD980430
EST:     CTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACAC                         GGGAACAGCACCTTCT
genomic: CTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACgtaagggatt ... ttacttgcagGGGAACAGCACCTTCT
EST: gi|207840571|gb|GD812248.1|GD812248
EST:     CTACATATGTCCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACAC                         GGGAACAGCACCTTCTCCAAGATTCAACCA
genomic: CTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACgtaagggatt ... ttacttgcagGGGAACAGCACCTTCTCCAAGATTCAACCA
EST: gi|208138046|gb|GD939396.1|GD939396
EST:     CTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACAC                         GGGAACAGCACCTTCTCCAA
genomic: CTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACgtaagggatt ... ttacttgcagGGGAACAGCACCTTCTCCAA