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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatcatagcgttccatttctgtaagaaaatcatgcctttgttttctgtttattttatagcatagaaatattttttttttcttaagtgattgact...

Basic information

species Glycine max
transcript GLYMA07G37640.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37640.4 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01220.t01 (Vitis vinifera), 5'ss of exon 8
GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatcatagcgttccatttctgtaagaaaat-catgcctttgttt-tctgtttattttatagcatagaaatattttttttttcttaagtgattgact
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GTACGACTGTGGCATGTTCATGATCAAATATGCTGATTTCTATAGCAGAGGCATAGAGCTCTGTTTCAACCAGgtaatgca-cataatgctgctcatgcatggagaaatatatgtatatccttgtatccttttttttctgtgttaagacatcttcctcttattcagtctccaat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208165713|gb|GD963701.1|GD963701
EST:     TCAAATATGCCGACTTCTATAGCAGTAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193552438|gb|FK509461.1|FK509461
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193616169|gb|FK570153.1|FK570153
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193335775|gb|FK299705.1|FK299705
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193326774|gb|FK288651.1|FK288651
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTT-CGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|208305883|gb|GE109562.1|GE109562
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACATTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193550632|gb|FK508467.1|FK508467
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193700539|gb|FK635084.1|FK635084
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACAATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATT
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACAC-ATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATT
EST: gi|193689585|gb|FK628828.1|FK628828
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA