Sequence
atgc intronic sequence ATGC exonic sequenceTTGATCAGTTCCTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCgtaagagattataactcttttttatttttataataaatagtaagagtagttttattagagaagagattataagtaatatgtcctcatataagtaaatgac...
Basic information
species | Glycine max |
transcript | GLYMA07G34890.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G34890.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os08g36774.1 (Oryza sativa), 5'ss of exon 8
TTGATCAGTTCCTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCgtaaga-gat-tataactctt----ttttatttttataataaatagtaagagtagttttattagagaagagattataagtaatatgtcctcatataagtaaatgac
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TTGATAAATTTTTAGCAAAATTGAGATCTCTTGGATTAGGAGAAGCTGCTTTCACCTTTGTTCTTGATGATCCTGCTGGAAATAGCTTCATTGAAAACCAgtaagatgatctgtaacctttggaattcaatttgtttgatgtgactttataggatcttttttagagttcttcttacatgaaagacaatgtccca-aagtgt-----
upper sequence: GLYMA07G34890.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G351582_T01 (Zea mays), 5'ss of exon 9
TTGATCAGTTCCTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCgtaagagattataactcttttttatttttataataaatagtaagagta---gttttattagagaagagattataagtaatatgtcctcatataagtaaatgac---------
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TCGATCAATTTTTACTGAAGTTGAGATCTCTTGGGTCAGGAGAGGCTGCATTCACTTTTATTCTTGATGATCCTGCAGGAAACAGCTTTATTGAGAATCCgtaag----------ttttttgtgtgggtatacctcataatttatgtacttgttctgatatggaagacattgtt--ctatgcatcataatgtaaatgtttgaactacttgga
upper sequence: GLYMA07G34890.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G37340.3 (Arabidopsis thaliana), 5'ss of exon 9
TTGATCAGTTCCTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCgtaagagattataactcttttttatttttataataaatagtaagagtagttttattagagaagagattataagtaatatgtcctcatataagtaaatgac
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TAGACCAATTCTTGTCTAAACTGAGAGCTTGTGCTAAAGCAGAGACATCATTCACCTTCATTTTGGATGATCCTGCTGGAAACAGTTTCATTGAGAACCCgtaaggatatttaacttggaagtaccataataaaatgtagttatatttattttatctgcttatga--cacaagtt-tacaacatatgacag---------
upper sequence: GLYMA07G34890.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G22480.1 (Arabidopsis thaliana), 5'ss of exon 9
TTGATCAGTTCCTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCgtaagagattataactcttttttatttttataataaatagtaagagtagttttattagagaagagattataagtaatatgtcctcatataagtaaatgac
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TAGACCAATTCTTGTCCAAACTGAGAGCTTGTGCTAAAGCAGAGACATCCTTCACCTTCATTTTGGATGATCCTGCTGGAAACAGTTTCATTGAGAACCCgtaagtatattcaatttggaaataccta-aagatatggaagaagttatgtttcttttatttgtttatgacaagtt-tacaacatgacag-----------
upper sequence: GLYMA07G34890.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g01690.t01 (Vitis vinifera), 5'ss of exon 8
TTGATCAGTTCCTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCgtaagag-attataactcttttttatttttataataaatagtaagagtagttttattagagaagagattataagtaatatg-tcctcatataa-gtaaatgac
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TAGATCAGTTTTTGTTAAAATTGAAGCCTTGTGCAACAGGAGATTCATCTTTCACCTTCAACCTGGATGATCCTGCTGGCAACAGCTTCATTGAGAACCCgtaagagcatttttttttttttttaattggaagggaaactttt---gccttttaacttgtgctgtcccttttaggtatatggttgagatagagtgttatttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192307037|gb|FK000015.1|FK000015EST: TTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCC GTTTGCACCATCATCTGATCCATCATTGA
genomic: TTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCgtaagagatt ... atgtgaacagGTTTGCACCATCATCTGATCCATCATTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGATCAGTTCCTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCgtaagagattataactcttttttatttttataataaatagtaagagtagttttattagagaagagattataagtaatatgtcctcatataagtaaatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA