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GAAGAGTTTGAGCCTATTTGGAGAAAAGGCTCCGGCTGAGCGGATGAAAGAGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATgtaattattattctttttttcttttctttcatccagttgagcacgcaaatacaatcattttatatgtaagagaaatctgttttgtattagtaaaatggtctcttgattttttactgctggctgaagttattaagtagtgtaagtagtatagatttcgttttggggtctcatgtaatggtttttaaatggcaatttttag
species | Glycine max |
transcript | GLYMA07G32480.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAAT GTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCAEST: gi|26058897|gb|CA801811.1|CA801811
genomic: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATgtaattatta ... caatttttagGTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA
EST: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAAT GTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCAEST: gi|58016932|gb|CX703674.1|CX703674
genomic: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATgtaattatta ... caatttttagGTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA
EST: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAAT GTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA
genomic: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATgtaattatta ... caatttttagGTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAGTTTGAGCCTATTTGGAGAAAAGGCTCCGGCTGAGCGGATGAAAGAGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATgtaattattattctttttttcttttctttcatccagttgagcacgcaaatacaatcattttatatgtaagagaaatctgttttgtattagtaaaatggtctcttgattttttactgctggctgaagttattaagtagtgtaagtagtatagatttcgttttggggtctcatgtaatggtttttaaatggcaatttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT