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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaacctgtctaagttccccttgaaaagttaatttttattgtggattttatataataagttgcttagttattgtttttggcattgcatccctgattaatcattatttgataccacag

Basic information

species Glycine max
transcript GLYMA07G32190.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32190.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 8
ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaacctgtctaagttccccttgaaaagttaatttttattgtggattttatataataagttgcttagttattgtttttggcattgcatccctgattaatcattatttgataccacag
||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||| || ||||| ||  | ||||| |||| ||| ||  |      || |       || |||  ||      |  | | |||| |  || | || || |  | | ||   || ||                              
ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaacatgatttgagatccttgagggttttgattccta-----aaactaaaataacagtttccatactt-tcatgtctgattttacag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692862|gb|AW760961.1|AW760961
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|15204849|gb|BI427617.1|BI427617
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|23728678|gb|BU762399.1|BU762399
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|7691785|gb|AW759906.1|AW759906
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|7691041|gb|AW759175.1|AW759175
EST:     CCTACATTTTCATCATTGCTCTAATTGTCTGTATACCACCTGCCGGAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|7796788|gb|AW782182.1|AW782182
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         GTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAAT
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAAT
EST: gi|14999814|gb|BI320628.1|BI320628
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|20449753|gb|BQ253877.1|BQ253877
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|8669180|gb|BE190287.1|BE190287
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAAT
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAAT
EST: gi|15284741|gb|BI468632.1|BI468632
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|23063798|gb|BU578627.1|BU578627
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTG
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTG
EST: gi|207826480|gb|GD798191.1|GD798191
EST:     TTGTCTGTATACCACCTGCCGTAA-T                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: TTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|31561027|gb|CD486865.1|CD486865
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|16346698|gb|BI972293.1|BI972293
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|26269548|gb|CA820611.1|CA820611
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCC
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCC
EST: gi|15199917|gb|BI424075.1|BI424075
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|7796582|gb|AW781979.1|AW781979
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATG                         TTGGAAGGGCCTACACTGNTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|14011803|gb|BG726725.1|BG726725
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|20498205|gb|BQ273135.1|BQ273135
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|20814778|gb|BQ299256.1|BQ299256
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|6481839|gb|AW201110.1|AW201110
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|26269373|gb|CA820436.1|CA820436
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|7691923|gb|AW760040.1|AW760040
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTTGAAGGGCCTACACTGTTGAAG
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAG
EST: gi|10237564|gb|BE806452.1|BE806452
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAA
EST: gi|8669191|gb|BE190298.1|BE190298
EST:     CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT                         TTGGAAGGGCCTACACTGTTGAAGCACGGCTACAAT
genomic: CCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTgtgagtgaaa ... gataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAAT