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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaatttaatgcttacgcgcatttattggttttattttttctaatgtattatgcaactgcaatttgtgaacatttattttataacttgtatagt...

Basic information

species Glycine max
transcript GLYMA07G31090.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31090.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 8
GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaatttaatgcttacgcgcatttattggttttattttttct-aatgtattatgcaactgcaatttgtgaacatttattttataacttgtatagt
| |||||||| ||||||||||| |||||||| |||||||| ||||| || ||||| |||||  ||||||| || ||| | |||||||||||||||||       | |  | | |  | |    | |  || |  |||   || |    | |   ||| | |||||        | | | ||| ||    | | ||
GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttcct-tctccttcctgggtgtggctgtctgtatcttttggactcagcaaagtcctcaattccaattcacatgtttatttgttaaaaagaatgttgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315267|gb|GR830260.1|GR830260
EST:     GTT-CTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|10255230|gb|BE822996.1|BE822996
EST:     GTGGTATCGCCCATTATATCGTGCTTTTAN                         NAATGNNNNTGCTTTGAAATTTNNNTGGTTTTTCCTGTTTTATCTG
genomic: GTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|23728768|gb|BU762445.1|BU762445
EST:     GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|10255778|gb|BE823488.1|BE823488
EST:     GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|6964344|gb|AW433037.1|AW433037
EST:     GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|13311994|gb|BG405645.1|BG405645
EST:     GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTNTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaatttaatgcttacgcgcatttattggttttattttttctaatgtattatgcaactgcaatttgtgaacatttattttataacttgtatagt

- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA