Sequence
atgc intronic sequence ATGC exonic sequenceTGTTTATTTTGGTTGGGCTGGATTGTCGGCAAGAGGTGTTTTTAAAATGGTGATGAGCATTGGTTGGAATCCATATTTCAACAACAAAGAAAAGGCTATAgtaagtgctttattatatacctccagctataactatttacctatgaattttcatattatctatgcctttttgtttcag
Basic information
species | Glycine max |
transcript | GLYMA07G30970.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G30970.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G21470.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTTTATTTTGGTTGGGCTGGATTGTCGGCAAGAGGTGTTTTTAAAATGGTGATGAGCATTGGTTGGAATCCATATTTCAACAACAAAGAAAAGGCTATAgtaagtgctttattatatacctccagctataactatttacctatgaattttcatattatctatgcctttttgtttcag
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AGTGTACTTTGGTTGGGCAGGCTTGGCAAAGAGAGGTGTCTTTAAAATGGTCATGAGCATTGGTTGGAATCCTTATTTCAATAACAAGGAGAAAACTATTgtgagt----tcataaaaagttcaaacaaaattcttactccagtggttgcttctttaactttagcttttgttatatag
upper sequence: GLYMA07G30970.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0181g00140.t01 (Vitis vinifera), 5'ss of exon 9
TGTTTATTTTGGTTGGGCTGGATTGTCGGCAAGAGGTGTTTTTAAAATGGTGATGAGCATTGGTTGGAATCCATATTTCAACAACAAAGAAAAGGCTATAgtaagtgc----tttattatatacctccagctat--aactatttacctatgaattttcatattatctatgcctttttgtttcag
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AGTATATTTCGGTTGGGCTGGATTATCAAAACAGGGTGTCTACAAGATGGTGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaacttggactgtaaaggtggaccttccaaatattttttctctctgtttttctaaatcccat---ttacaattttag
upper sequence: GLYMA07G30970.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0181g00130.t01 (Vitis vinifera), 5'ss of exon 8
TGTTTATTTTGGTTGGGCTGGATTGTCGGCAAGAGGTGTTTTTAAAATGGTGATGAGCATTGGTTGGAATCCATATTTCAACAACAAAGAAAAGGCTATAgtaagtgc----tttattatatacctccagct----ataactatttacctatgaattttcatattatctatgcctttttgtttcag
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AGTATATTTCGGTTGGGCTGGATTATCAAAACAGGGTGTCTACAAGATGGTGATGAGCATTGGCTGGAATCCATATTTCAACAACACCGAGAAAACTATAgtgagtgcaacttggactgtaaaggtggaccttccaaatattttttctctctgtttttctaaatctcatttacaattttag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6718628|gb|AW306275.1|AW306275EST: TGATGAGCATTGGTTGGAATCCATATTTCAACAACAAAGAAAAGGCTATA GAACCATGGTTACTCCATGACTTTAATGAAGATTTCTATGGGGAAGAACTG
genomic: TGATGAGCATTGGTTGGAATCCATATTTCAACAACAAAGAAAAGGCTATAgtaagtgctt ... tttgtttcagGAACCATGGTTACTCCATGACTTTAATGAAGATTTCTATGGGGAAGAACTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTTATTTTGGTTGGGCTGGATTGTCGGCAAGAGGTGTTTTTAAAATGGTGATGAGCATTGGTTGGAATCCATATTTCAACAACAAAGAAAAGGCTATAgtaagtgctttattatatacctccagctataactatttacctatgaattttcatattatctatgcctttttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA