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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGATCCTGGTTATATAAAACGACCGGGAGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtcctttgtggttgtttaaaagaatgttgctttcgagtgatgattgttacgaagaaaagacttgcacccacaaaccggattttatcagggaaa...

Basic information

species Glycine max
transcript GLYMA07G30380.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193728572|gb|FK667170.1|FK667170
EST:     CCGGGAGACTTGGGTACTCAAAGCGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTTGTTTGGATGGGAAA
genomic: CCGGGAGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTC-TGTTTGGATGGGAAA
EST: gi|193422348|gb|FK389737.1|FK389737
EST:     CGACCGGGAGACTTGGGTACTCAAAGTAAGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAA
genomic: CGACCGGGAGACTTGGGTACTCAAAGT--GATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAA
EST: gi|193540927|gb|FK496075.1|FK496075
EST:     AGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTT-GGATGGGAAA
genomic: AGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAA
EST: gi|193718537|gb|FK649091.1|FK649091
EST:     AGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: AGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193670139|gb|FK608651.1|FK608651
EST:     CCGGGAGTACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: CCGGGAG-ACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193486106|gb|FK450864.1|FK450864
EST:     AGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTT-GGATGGGAAAT
genomic: AGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193465602|gb|FK432843.1|FK432843
EST:     AGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: AGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193407162|gb|FK375281.1|FK375281
EST:     AGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: AGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193322662|gb|FK289934.1|FK289934
EST:     CGACCGGGAGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: CGACCGGGAGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193551071|gb|FK507940.1|FK507940
EST:     CCGGGAGACTTGGGTACTCAAAGCGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: CCGGGAGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193410793|gb|FK376360.1|FK376360
EST:     CGACCGGGAGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: CGACCGGGAGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193483837|gb|FK452352.1|FK452352
EST:     AGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: AGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193499891|gb|FK464248.1|FK464248
EST:     CCGGGAGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: CCGGGAGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193715236|gb|FK649827.1|FK649827
EST:     CCGGGAGACTTGGGTACTCAAAGCGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: CCGGGAGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193556412|gb|FK511061.1|FK511061
EST:     AGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGNTGGGAAAT
genomic: AGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
EST: gi|193324203|gb|FK292609.1|FK292609
EST:     CGACCGGGAGACTTGGGTACTCAAAGTGATACTGAG                         GATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT
genomic: CGACCGGGAGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtc ... tattctgcagGATCCGTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAAGATCCTGGTTATATAAAACGACCGGGAGACTTGGGTACTCAAAGTGATACTGAGgtatgcagtcctttgtggttgtttaaaagaatgttgctttcgagtgatgattgttacgaagaaaagacttgcacccacaaaccggattttatcagggaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacccac