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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGAGGTTTTAAGGGAGGAAATAAAGAATGCACGTCTAGTTGCTAATCCTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAGgtaagcatgttttctttgcactatacagtatgtagaataagtgaattttccttttaagaaaatggcgtgtgattaaaattctaaaattagtataaaattg...

Basic information

species Glycine max
transcript GLYMA07G29630.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G29630.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g42110.1 (Oryza sativa), 5'ss of exon 8
AACAGAGGTTTTAAGGGAGGAAATAAAGAATGCACGTCTAGTTGCTAATCCTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAGgtaagc-atgttttctttgcactatacagtatgtagaataagtgaattttccttttaagaaaatggcgtgtgat-taaaattctaaaattagtataaaattg
 || || ||| |  |  | ||||||| ||||||||| || ||||| ||||| || |||||||| || ||| |||||||||||||||| ||  | ||||||||  |  |    || |    | |    ||| |||  ||       ||| |  ||  |  || |    ||    | || || |   |        | |  |  
GACTGAAGTTCTTCGCAATGAAATAAGGAATGCACGGCTTGTTGCAAATCCGGGATGTTATCCCACATCTATTCAACTTCCTCTTGTTCCTCTAATAAAGgtgggggactaattatcaatagttcttagt-tgtgcaaatctctgattctaattgcatcaataacttgtcaactctagaaataggagtcctcagttatgtc-

upper sequence: GLYMA07G29630.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g35170.1 (Oryza sativa), 5'ss of exon 8
AACAGAGGTTTTAAGGGAGGAAATAAAGAATGCACGTCTAGTTGCTAATCCTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAGgtaagcatgttttctttgcactatacagtatgtagaataagtgaattttccttttaagaaaatggcgtgtgattaaaattctaaaattagtataaaattg---
||| || ||| |  | || |||||||  |||||||| || ||||| ||||| || |||||||| || ||| |||| ||||||||||| ||  |||||||||| |  | |     ||  ||  |   | || ||   ||| |    | |   || |||  |||   |     | || |||   |      ||| |||| |    
AACTGAAGTTCTTCGAGATGAAATAAGAAATGCACGACTTGTTGCAAATCCAGGATGTTATCCCACATCTATTCAGCTTCCTCTTGTTCCTCTGATAAAGgtgatgagggaagattaacagaagttatta-gtcatatatggttctctgatttctaatgaaac--caacaaaatataatcacattgagtgtacaaaactaacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016973|gb|CX703715.1|CX703715
EST:     TCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAG                         GCTAGTCTTATTGAGCTTAAAAATATTATCA-TGATTTCTAAATCTGGTGT
genomic: TCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAGgtaagcatgt ... tgttttgcagGCTAGTCTTATTGAGCTTAAAAATATTATCATTGA-TGCTAAATCTGGTGT