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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAGgtcagtttttttttttaatctgaaaattatgtgcgatatttatataatctgaaaattgttagcaacacactctaatactctttctaacacactattacta...

Basic information

species Glycine max
transcript GLYMA07G29500.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G29500.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 8
AGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAGgtcagtttttttttttaatctgaaaatt-atgtgcgatatt-tatataatctgaaaattgttagcaaca-cact-ctaatactctttctaacacactattacta
|| ||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||| ||||| ||||| ||||| || || ||||||  ||| |||   |||||| | |    |  ||  | ||| |  |  |   || |   || ||  ||||      || |  | ||| || |   | ||| ||       
AGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacattttttaattacagatcttcgtttgcaagttcatgggtattggtaacatgtttagtgctttcattattgatattcatctgagcacccttgc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328433|gb|GR835398.1|GR835398
EST:     CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAG                         AGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTG
genomic: CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAGgtcagttttt ... ttttaaatagAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTG
EST: gi|31472689|gb|CD414717.1|CD414717
EST:     CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCCGACCCTGCACAGG                         AGGATAAGTATCCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCT
genomic: CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACA-Ggtcagttttt ... ttttaaatagAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCT
EST: gi|254328432|gb|GR835397.1|GR835397
EST:     CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAG                         AGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTG
genomic: CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAGgtcagttttt ... ttttaaatagAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTG