Sequence
atgc intronic sequence ATGC exonic sequenceGGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAgtaataatctggttcttatctattgacttaggtgattagttctcccattattcaaggtgaacttttaaatattttcag
Basic information
species | Glycine max |
transcript | GLYMA07G26540.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 8
GGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAgtaataa-tctggttc-ttatcta--ttgacttaggtgattagttctcccattattcaaggtgaacttttaaatattttcag------
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GGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAAgtaacaaatcttatccattagtcagcttctttcagttgatcttgttacacagaacaagaagtaatatattttgtttgtgcaatttcag
upper sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G01750.2 (Arabidopsis thaliana), 5'ss of exon 9
GGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAgtaataatctgg--ttcttatctat-tgacttaggtgat--tagttctcccattattcaaggtgaacttttaaatattttcag-------------
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GGAGAAATGCAACAACTACGTGACAAACTTGCCATAGCTGATCGAGCTGCAAAATCTGAAGCTCAGCTAAAGgtaagaattcggagttcagatccatatagctttagtcttctttatgtccttatgtatcaaggctttaattagaattgctgcttttgccttttgcag
upper sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 8
GGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAgtaataatctggttcttatctattgacttaggtgattagttctcccattattcaaggtga-acttttaaatattttcag
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GGAGAAATGCAACAACTACGCGACAAACTTGCCATAGCTGACCGAGCTGCAAAATCTGAAGCTCAGCTGAAGgtagaatcatagctgcgggacaccatcttattttttttaatctcctaactgaggaattgctgcttttacttatttttag
upper sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 8
GGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAgtaa-taatctggttctt----atctattgacttaggtgat----tagttctcccattattc----aaggtgaacttttaaatattttcag----
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GGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAAgtaaataatttgctttttcagaatatacatgtctaagctctgcaatattttccacatggttcttgaaaatagaacttttgaattgtactgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193665776|gb|FK609663.1|FK609663EST: ACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAA GAAAAATATCATTTACGACTTAAAGTGCTAGAGGAGAGTTTGAGAGGAA
genomic: ACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAgtaataatct ... atattttcagGAAAAATATCATTTACGACTTAAAGTGCTAGAGGAGAGTTTGAGAGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAgtaataatctggttcttatctattgacttaggtgattagttctcccattattcaaggtgaacttttaaatattttcag
- - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC