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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTGGGGCGCTTCTTACATTCGGCTGGGGACTGTATGGCCAGgtgagtttgctgttaatggaattttttaatagtttcctatgttgatcttctgcctagttgaaaggcattttatttttgttgctaaggataagatagagct...

Basic information

species Glycine max
transcript GLYMA07G16400.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208260258|gb|GE060624.1|GE060624
EST:     GACTGTATGGCCAG                         TGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT
genomic: GACTGTATGGCCAGgtgagtttgc ... tttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT
EST: gi|193384494|gb|FK350612.1|FK350612
EST:     CGGCTGGGGACTGTTATTGGCCAG                         TGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTC
genomic: CGGCTGGGGACTG-TA-TGGCCAGgtgagtttgc ... tttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTC
EST: gi|208125852|gb|GD921596.1|GD921596
EST:     CGGCTGGGGACTGTATGGCCAG                         TGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT
genomic: CGGCTGGGGACTGTATGGCCAGgtgagtttgc ... tttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT
EST: gi|193592326|gb|FK545600.1|FK545600
EST:     CGGCCGGGGACTGTATGGCCAG                         TGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT
genomic: CGGCTGGGGACTGTATGGCCAGgtgagtttgc ... tttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT