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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGCCTAAGATACTGATGACTGGAAAATGGAATGAGGCTATGAATTATCAAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAGgtttgttattcaaactttcgtcactgttacagcagattttattgattattataaatattctatattacgacttagtagcataccactttacataactatg...

Basic information

species Glycine max
transcript GLYMA07G15930.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727396|gb|BU761727.1|BU761727
EST:     AAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAG                         ATTTGGAGAGTTGCTGATACCCCGAAGAAGGACAAGTTCCAGTACACGCAT
genomic: AAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAGgtttgttatt ... ttctgcacagATTTGGAGAGTTGCTGATACCCCGAAGAAGGACAAGTTCCAGTACACGCAT
EST: gi|9820741|gb|BE556251.1|BE556251
EST:     AAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAG                         ATTTGGAGAGTTGCTGATACCCCGAAGAAGGACAAGTTCCAGTACACGCAT
genomic: AAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAGgtttgttatt ... ttctgcacagATTTGGAGAGTTGCTGATACCCCGAAGAAGGACAAGTTCCAGTACACGCAT
EST: gi|7284099|gb|AW596698.1|AW596698
EST:     AAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAG                         ATTTGGAGAGTTGCTGATACCCCGAAGAAGGACAAGTTCCAGTACACGCAT
genomic: AAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAGgtttgttatt ... ttctgcacagATTTGGAGAGTTGCTGATACCCCGAAGAAGGACAAGTTCCAGTACACGCAT
EST: gi|254327936|gb|GR834901.1|GR834901
EST:     AAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAG                         ATTTGGAGAGTTGCTGATACCC
genomic: AAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAGgtttgttatt ... ttctgcacagATTTGGAGAGTTGCTGATACCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGCCTAAGATACTGATGACTGGAAAATGGAATGAGGCTATGAATTATCAAGTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACTGAGTTGAAAGAGgtttgttattcaaactttcgtcactgttacagcagattttattgattattataaatattctatattacgacttagtagcataccactttacataactatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA