Sequence
atgc intronic sequence ATGC exonic sequenceATTTTAGAGTATCATCCTCGGATGCTTGAAGAATATCTTCGTTGTGGAGAACAAACAAGCTTCATGTATCCAAGgtagggaagtaatactgactattgaaaagttaagtctatttctttctctaacttgataggttttcagatttctgatagtgctatcatatgattgtttttg...
Basic information
species | Glycine max |
transcript | GLYMA07G11470.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G11470.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G18040.1 (Arabidopsis thaliana), 5'ss of exon 8
ATTTTAGAGTATCATCCTCGGATGCTTGAAGAATATCTTCGTTGTGGAGAACAAACAAGCTTCATGTATCCAAGgtagggaagtaatactgactattgaaaagttaagtctatttctttctctaacttgataggttttcagatttctgatagtgctatcatatgattgtttttg---
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ATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAGgtatataaaaa--------catttagaatccgtgttcaaaatttactacgaattatgagaagtgaaga----taaagattttgtaatctaaatgaaaatgcag
upper sequence: GLYMA07G11470.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 8
ATTTTAGAGTATCATCCTCGGATGCTTGAAGAATATCTTCGTTGTGGAGAACAAACAAGCTTCATGTATCCAAGgtagggaagtaatactga--ctattgaaa-------agttaagtctatttctttctctaacttgataggttttcagatttctgatagtgctatcatatgattgtttttg
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ATCCTAGAGTATCATCCCCAGATGCTGCAGGAGTATCTTCGTGGTGGAGATCAAACTAGCTTCATGTACCCGAGgtcaggcattc-tactgaatccattgtcactcttataatgagagctatctcattcttctactaaattgctggt--gctttaatatacttctg-cat-tgattccc----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208157185|gb|GD955871.1|GD955871EST: CTTGAAGAATATCTTCGTTGTGGAGAACAAACAAGCTTCATGTATCCAAG TGGGGTTGACCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGG
genomic: CTTGAAGAATATCTTCGTTGTGGAGAACAAACAAGCTTCATGTATCCAAGgtagggaagt ... ccttttgcagTGGGGTTGACCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTTAGAGTATCATCCTCGGATGCTTGAAGAATATCTTCGTTGTGGAGAACAAACAAGCTTCATGTATCCAAGgtagggaagtaatactgactattgaaaagttaagtctatttctttctctaacttgataggttttcagatttctgatagtgctatcatatgattgtttttg
- - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT