Sequence
atgc intronic sequence ATGC exonic sequenceGGGTGAGCTGGATTACCTCATTATTGACATGCCTCCTGGAACTGGAGATATTCAACTCACATTATGCCAGgttctggtcctttagcttgtttcacattacattttggctgatagggctggaattgggccagcttgaacacctttgatatgaaatcagaacagtcaaatgt...
Basic information
species | Glycine max |
transcript | GLYMA07G09820.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G09820.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G24430.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGTGAGCTGGATTACCTCATTATTGACATGCCTCCTGGAACTGGAGATATTCAACTCACATTATGCCAGgttctggtcctttagcttgtttcacattacattttggctgatagggctggaattgggccagcttgaacacctttgatatgaaatcagaacagtcaaatgt-------------
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GGGAGAGCTGGACTATCTTGTTATCGACATGCCTCCTGGAACTGGTGATATACAACTGACCTTATGCCAGgttcgg----ttttgaatattatacaac-catttctact--------ttacttttagttcgttcgcatatgtagggaatgaaagtaatgcaaatatatatgtgccaatgcttt
upper sequence: GLYMA07G09820.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g04250.t01 (Vitis vinifera), 5'ss of exon 7
GGGTGAGCTGGATTACCTCATTATTGACATGCCTCCTGGAACTGGAGATATTCAACTCACATTATGCCAGgttctggtcctt--tagcttgtttcacattacattttggctgatagggctggaattgggccagcttgaacacctttgatatgaaatcagaacagtcaaatgt
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GGGAGAGCTGGACTACCTTGTTATTGACATGCCCCCTGGAACTGGTGATATTCAACTTACTTTGTGCCAGgttctgcctcttggtgctctatttatttatttatttattatgcctatcaaagaactgcattaatctagt--tcattgcttttatgtttgttgcttctcttga
upper sequence: GLYMA07G09820.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ08337 (Selaginella moellendorffii), 5'ss of exon 7
GGGTGAGCTGGATTACCTCATTATTGACATGCCTCCTGGAACTGGAGATATTCAACTCACATTATGCCAGgttctggtcctt---tagcttgtttcacattacattttggctgatagggctggaattgggccagcttgaacacctttgatatgaaatcagaacagtcaaatgt
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GGGAGAGCTGGATTATCTGATAATTGACATGCCGCCTGGAACAGGAGACATTCAGCTTACACTCTGCCAGgttactatcttcgactagcttttggcatacta-atctttgttagcttttcggcag------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51345383|gb|CO986116.1|CO986116EST: TTATTGACATGCCTCCTGGAACTGGAGATATTCAACTCACATTATGCCAG GTAGTTCCATTAACTGCTGCTGTAATTGTTACCACTCCTCAAAAGCTGTCG
genomic: TTATTGACATGCCTCCTGGAACTGGAGATATTCAACTCACATTATGCCAGgttctggtcc ... atttctttagGTAGTTCCATTAACTGCTGCTGTAATTGTTACCACTCCTCAAAAGCTGTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTGAGCTGGATTACCTCATTATTGACATGCCTCCTGGAACTGGAGATATTCAACTCACATTATGCCAGgttctggtcctttagcttgtttcacattacattttggctgatagggctggaattgggccagcttgaacacctttgatatgaaatcagaacagtcaaatgt
- - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAT