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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCGGGTTTGTTTTTGGGTATCTACCATTCCAGCTGCTATACTTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacctagtctaatattatttcatcttagatattatctcttattatcttttcatttgtaacttactgtttctatattagtttgaaccccttgacgt...

Basic information

species Glycine max
transcript GLYMA07G09270.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09270.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 8
GTGGCGGGTTTGTTTTTGGGTATCTACCATTCCAGCTGCTATACTTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacctagtctaatattatttcatcttagatattatctcttattatcttttcatttgtaacttactgtttctatattagtttgaaccccttgacgt---
||||||  ||||||||||| || ||||  |||||||||  ||||||||    || ||| | ||||| |||||||||||||| ||| |||||||||||       |        || | |    | ||||  | | |  | || ||  | ||  ||  |  | ||||| ||   ||   | |  | | |   | |   
GTGGCGCATTTGTTTTTGGATAGCTACAGTTCCAGCTGGAATACTTGCTTTTGCCATGATGTTCTGTGCAGAGAGTCCACACTGGCTATACAAGgtttgctgtcatatgtgccttttgtaccttgagatgatttattgttttgtccatccaagtgccaggttctgttgct---ttgaatggttctcttgtgcttccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319871|gb|GR830895.1|GR830895
EST:     TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG                         CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
genomic: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
EST: gi|254339874|gb|GR857999.1|GR857999
EST:     TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG                         CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
genomic: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
EST: gi|15200276|gb|BI424265.1|BI424265
EST:     TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG                         CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGCGTA
genomic: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
EST: gi|15200088|gb|BI424166.1|BI424166
EST:     TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG                         CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
genomic: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
EST: gi|192333445|gb|FK023974.1|FK023974
EST:     AGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG                         CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
genomic: AGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA