Sequence
atgc intronic sequence ATGC exonic sequenceCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATgtgagttacttgttttatgtactgcatctttcacttgacagtttttgaagtagcatttgtaacactaatatttacccaccattttacag
Basic information
species | Glycine max |
transcript | GLYMA07G09070.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G09070.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G60950.1 (Arabidopsis thaliana), 5'ss of exon 7
CCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATgtgagttacttgttt--tatgtactgcatctttca-----cttgacagtttttgaagtagcatttgtaacactaatatttacccaccattttacag-
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CCAAAACCAAGAATTGATTACACTCTGAAGGCTGTCCGTGGAAGCTTAACAGCAATTCCTGGACTATCTGCTATGATTGATgtaagttcctctcttggtaggtcaagcagtttccaaaagttttagttgttgttcccatttggtcttatacacagctttttgcttctctttctgttag
upper sequence: GLYMA07G09070.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G61050.1 (Arabidopsis thaliana), 5'ss of exon 8
CCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATgtgagttacttgttttatgtactgcatctttcacttgacagtttttgaagtagcatttg---taacac-taatatttacccaccattttacag-
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CCAAAACCAAGAATTGATTACACTCTGAAGGCTGTTGGTGGAAGCTTAACAGCAATTCCTGGACTATCTGATATGATTGATgtaagttcctctcttggta-gttcaagcagtttcaagaggttttatttgttcccatttggtcttatacacagcttttgcttctctctatgttag
upper sequence: GLYMA07G09070.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0048g01410.t01 (Vitis vinifera), 5'ss of exon 8
CCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATgtgagttacttgttttatgtactgcatctttcacttgacagtttttgaagtagcatttgtaa-----cactaatatttacccaccattttacag
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CCAAAGCCAAGAATTGATTATACTCTGAAGGCTGTTGGTGGAAGTTTAACAGCTCTCCCTGGAATTTCAGATATGATTGATgtaagtttctttatgttgtcaaaacatttgctttcttatttctgattgatttttgtttatagactagtaatgctgtttatgtttcatcgagtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27808987|gb|CB063409.1|CB063409EST: CTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGAT GATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATT
genomic: CTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATgtgagttact ... cattttacagGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATgtgagttacttgttttatgtactgcatctttcacttgacagtttttgaagtagcatttgtaacactaatatttacccaccattttacag
- - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - TGGAAG