Sequence
atgc intronic sequence ATGC exonic sequenceTACCCTATGCAGAAGATGACACATTTTCTCCTAAGGTTGAGTTTGATGATGGTGATATAGATGATGAGATTGATCCTGCTTTAAAGGAAAAAATTGACAGgtggaattattttctaactcaatgcttactgtattgtaatgtttttcaaatctattttgtatagcatagttgctcttgaaagtcactagctttttttctg...
Basic information
species | Glycine max |
transcript | GLYMA07G07600.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G07600.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G61415.2 (Arabidopsis thaliana), 5'ss of exon 8
TACCCTATGCAGAAGATGACACATTTTCTCCTAAGGTTGAGTTTGATGATGGTGATATAGATGATGAGATTGATCCTGCTTTAAAGGAAAAAATTGACAGgtg---gaattattttctaactcaa---tgcttactgtattgtaatgtttttcaaatctattttgtatagcatagttgctcttgaaagtcactagctttttttctg------------------------------------------------------------------------------------
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TACCTAGTATGGAAGATGACATTTTTACGCCAAAGACTGAGTTTGAAGATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAACTGCTTGATAGgtaagtggttctttttctacctgaagtattcgttttgggctgaaataataattgatagcagtcacctctccaaatataccttctacaaacctcggcttctagactaaatatgaagatctacatcgaattgtgcggccattaagtgaaactaaattaaattattgaaccttatgttaatatgttaatacag
upper sequence: GLYMA07G07600.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g02450.t01 (Vitis vinifera), 5'ss of exon 7
TACCCTATGCAGAAGATGACACATTTTCTCCTAAGGTTGAGTTTGATGATGGTGATATAGATGATGAGATTGATCCTGCTTTAAAGGAAAAAATTGACAGgtggaatt---attttctaactcaatgcttactgtattgtaatgtttttcaaatctattttgtatagcatagttgctcttgaaagtcactagctttttttctg
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TACAAGATATTCAGGATGACATGTTTTCACCTCAAGCCAATTTTGAAGATGGTGATATTGATGATGAATTTGATCCTGCGATTCAGGAAAAAATTGATAGgtgagcctgataatattagagtatattcatacaatga-atattgctgcaaaattgtagtttttactttat-gtggagagttcaagtcattaccataagtaaa-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208057509|gb|GD851660.1|GD851660EST: GTGTATATAGATGATGAGATCGATCCTGCTTTAAAGGAAAAAATTGACAG GGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAAT
genomic: GTG-ATATAGATGATGAGATTGATCCTGCTTTAAAGGAAAAAATTGACAGgtggaattat ... tttgatgcagGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACCCTATGCAGAAGATGACACATTTTCTCCTAAGGTTGAGTTTGATGATGGTGATATAGATGATGAGATTGATCCTGCTTTAAAGGAAAAAATTGACAGgtggaattattttctaactcaatgcttactgtattgtaatgtttttcaaatctattttgtatagcatagttgctcttgaaagtcactagctttttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA