Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGGTATTGAGGCACTGTATAAGAAGGTTCATGCCGCCATTCGTGCTGATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatgagttttgacttgaactagaataatactagattcttgatttccagcagtgattttcagctatttatgtgctatattgggcgtgaccgtttttgtttgacttttagaaattttggattggtaacttttggtatttactgattggagaatgttcctgagagtatctgctctgcctctttctgcag

Basic information

species Glycine max
transcript GLYMA07G06580.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06580.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 8
CTGATGGTATTGAGGCACTGTATAAGAAGGTTCATGCCGCCATTCGTGCTGATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatgagttttgact-tgaactagaataatactagattcttgatttccagcagtgattttcagctatttatgtgctatattgggcgtgaccgtttttgtttgacttttagaaattttggattggtaacttttggtatttactgattggagaatgttcctgagagtatctgctctgcctctttctgcag
||||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||  |    |||||    ||| ||   |||  |   ||||||||||| |  ||| | | |    |||  |     || | ||  ||  |||| ||||    ||||| | |   | ||   |  |    |  |                                                                                                        
CTGATGGCATGGAAGCACTGTACAAGAAGGTCCATGCTGCCATCCGTGCTGATCCTACCATGGCCAAATCAACCAAGAAGGAACCGGCGACCCACAAGAGgtaca--tgaatctggctgatgatttctggaaagatta--tttgtgatgtccatgtatgattgtaactaacttgcatctttgtctcag--------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039272|gb|BM307566.1|BM307566
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|21257166|gb|BQ454054.1|BQ454054
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|8283526|gb|BE021085.1|BE021085
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193650345|gb|FK597204.1|FK597204
EST:     GATCCTACTCTCAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|21257394|gb|BQ454282.1|BQ454282
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208175265|gb|GD975946.1|GD975946
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGA
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGA
EST: gi|298175318|gb|HO015977.1|HO015977
EST:     GATCCTACTCTTAAGAAATCCGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193524884|gb|FK480123.1|FK480123
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193721465|gb|FK660413.1|FK660413
EST:     TCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: TCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208257846|gb|GE053803.1|GE053803
EST:     TCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: TCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|207774447|gb|GD746299.1|GD746299
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208338344|gb|GE136916.1|GE136916
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|207741004|gb|GD714382.1|GD714382
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGAATTG
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGA-TTG
EST: gi|208238361|gb|GE039967.1|GE039967
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193692620|gb|FK632807.1|FK632807
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|19269143|gb|BM885399.1|BM885399
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193454722|gb|FK417341.1|FK417341
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|38193704|gb|CF922910.1|CF922910
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|18039512|gb|BM307806.1|BM307806
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208069204|gb|GD870008.1|GD870008
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCT
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCT
EST: gi|208330563|gb|GE126348.1|GE126348
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|207809554|gb|GD782286.1|GD782286
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAG
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAG
EST: gi|208338016|gb|GE134362.1|GE134362
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAG-CCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGG-AGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193489203|gb|FK457152.1|FK457152
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGACGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193333219|gb|FK298753.1|FK298753
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193566441|gb|FK524990.1|FK524990
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208042904|gb|GD838740.1|GD838740
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193594582|gb|FK546259.1|FK546259
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208133403|gb|GD930412.1|GD930412
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGA
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTG-
EST: gi|207733140|gb|GD709984.1|GD709984
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATT
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATT
EST: gi|208138827|gb|GD938531.1|GD938531
EST:     TCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: TCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208188949|gb|GD987329.1|GD987329
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTT
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTT
EST: gi|207691624|gb|GD675285.1|GD675285
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACTAACTTCGAAGAAGCTGACTTATGAGGAGAAGGAAGGCTAAGTTGA
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTAC-AACTT-GAAGAAGCTGACTTATGAGGAGA-GGAAGGCTAAGTTGA
EST: gi|8827338|gb|BE211068.1|BE211068
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|207768992|gb|GD741125.1|GD741125
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193415241|gb|FK380131.1|FK380131
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|31474897|gb|CD416925.1|CD416925
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193403467|gb|FK366837.1|FK366837
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCC-GAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGACTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208334164|gb|GE130023.1|GE130023
EST:     CCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: CCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208195512|gb|GD993443.1|GD993443
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTG
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTG
EST: gi|193355004|gb|FK321689.1|FK321689
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208244550|gb|GE036211.1|GE036211
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTCGAAGAAGCTGACTTATGAGGAGAGGAAG-CTAAGTTGA
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTT-GAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGA
EST: gi|207768185|gb|GD740821.1|GD740821
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATT
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATT
EST: gi|27423759|gb|CA935279.1|CA935279
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|298183141|gb|HO028404.1|HO028404
EST:     GATCCCACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|6849003|gb|AW351293.1|AW351293
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193388622|gb|FK357511.1|FK357511
EST:     GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatga ... ctttctgcagGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGATGGTATTGAGGCACTGTATAAGAAGGTTCATGCCGCCATTCGTGCTGATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaaaatgagttttgacttgaactagaataatactagattcttgatttccagcagtgattttcagctatttatgtgctatattgggcgtgaccgtttttgtttgacttttagaaattttggattggtaacttttggtatttactgattggagaatgttcctgagagtatctgctctgcctctttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA