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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaatacatatatatcttgtttttaaatgtcctcaattttaaaattattgatgaataatagttgcccaacaatattttgttaacaatcaaata...

Basic information

species Glycine max
transcript GLYMA07G06230.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06230.2 (Glycine max), 5'ss of exon 8
lower sequence: AT2G46420.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaatacatatatatcttgtttttaaatgtcctcaattttaaaatta--ttga---tgaataatagttgcccaacaatattttgtta-acaatcaaata----------------------------
|| |||| ||| | ||||||||||| ||||| || ||| |||||||||||||||| ||||| || || ||||| || ||| |||| ||||||||   | |   |  |    |||   | | ||| || |    || ||| | |   ||||   || ||  ||       || | | |  |||   |  ||||   |                            
ATTTAGGGGCTTTAGGAAACTATCCCGGTTCTCCTTTTCTGCCATCTGATTCAGAGATTTTACTTGACTCTCCCGAACAAGAGGACATAGgtaaacattagctctcac---tctccatctaaaaggtgcaatcttataagaatggtttgaacatggatgttatagatttaaaagtttcatgtcctatgatcactaaccaatatcttcgtttctgtatcccgtag

upper sequence: GLYMA07G06230.2 (Glycine max), 5'ss of exon 8
lower sequence: AT3G61700.2 (Arabidopsis thaliana), 5'ss of exon 8
----------ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaatacat--atatatcttgtttttaaatgtcctcaattttaaaattattgatgaataatagttgcc-caac-aatattttgttaacaatcaaata
          || |||||||  | ||||||||||| || || |||||| | |||||||||||||| ||||| || || |||||||| ||| |||| ||||||| | |   ||   |  |    |||| ||  |     | | | | | |  ||| |    ||||  | | |||   |||  |||| |   || | || | |   
TATGTTGCAGATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctcttatttttcaactcttcttcttcctccggtttcactagtcttgaatcag-attgaactagatttggtacaatgaataataaattgaaaaccca---

upper sequence: GLYMA07G06230.2 (Glycine max), 5'ss of exon 8
lower sequence: AT3G61700.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaatacat--atatatcttgtttttaaatgtcctcaattttaaaattattgatgaataatagttgcc-caac-aatattttgttaacaatcaaata
|| |||||||  | ||||||||||| || || |||||| | |||||||||||||| ||||| || || |||||||| ||| |||| ||||||| | |   ||   |  |    |||| ||  |     | | | | | |  ||| |    ||||  | | |||   |||  |||| |   || | || | |   
ATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctcttatttttcaactcttcttcttcctccggtttcactagtcttgaatcag-attgaactagatttggtacaatgaataataaattgaaaaccca---

upper sequence: GLYMA07G06230.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 8
ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaat-acatatatatcttgtttttaaatgtcctcaattttaaaattattgatgaataatagttgcccaacaatattttgttaacaatcaaata----
||||||||||| |||||||||| || ||||| || ||| ||   |||||||||||||||||||| || ||||| || ||| |||||||||||||| | ||||  ||| | | || | ||||      | ||||   |  ||||| |  ||     | ||   |   |   | | |    |   |     ||    
ATCTAGGAGCTTTGGGAAACTACCCCGGTTCTCCCTTTCTGGGTTCTGATTCAGACATTTTGCTTGATTCTCCGGAGCAAGAGGATATAGgtaatttgaaattgcatctctgtcctatttt----ctttctcacaatgcaaattctccatctggga-agacacatgattttgtatctaaatggaatggttataag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208327607|gb|GE124131.1|GE124131
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|207820415|gb|GD792869.1|GD792869
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|193385173|gb|FK352327.1|FK352327
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCGTGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|208242168|gb|GE042370.1|GE042370
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|193415372|gb|FK380192.1|FK380192
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGGCTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|12689880|gb|BG156216.1|BG156216
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|208108701|gb|GD907133.1|GD907133
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|208260386|gb|GE058512.1|GE058512
EST:     GCCATCTGATTCAGACA-TTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|207719843|gb|GD701698.1|GD701698
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|6913615|gb|AW395145.1|AW395145
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|7796003|gb|AW781400.1|AW781400
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|193314343|gb|FK280144.1|FK280144
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGC
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGC