1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGATGGATTTAGAGTGACAGATCCTCATCGCTCCAGTCAAAGAGAAGCAGTGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtattataaccagcactaagtaaaaggctactttaagattatttatggtgaatttatatctatgattgcagttggcttggaaactcctatagcatgtttcactaaagatattattaacaagcactctaatttcttgtatag
species | Glycine max |
transcript | GLYMA07G05530.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAGEST: gi|23063602|gb|BU578576.1|BU578576
genomic: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtattataac ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
EST: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAGEST: gi|22933025|gb|BU550164.1|BU550164
genomic: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtattataac ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
EST: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAGEST: gi|208149147|gb|GD945947.1|GD945947
genomic: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtattataac ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
EST: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAEST: gi|22931476|gb|BU548615.1|BU548615
genomic: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtattataac ... tcttgtatagGTTCGATATCAA
EST: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAGEST: gi|16995690|gb|BM085062.1|BM085062
genomic: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtattataac ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
EST: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
genomic: TGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtattataac ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGATTTAGAGTGACAGATCCTCATCGCTCCAGTCAAAGAGAAGCAGTGCTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtattataaccagcactaagtaaaaggctactttaagattatttatggtgaatttatatctatgattgcagttggcttggaaactcctatagcatgtttcactaaagatattattaacaagcactctaatttcttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG