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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatttgttttttaactctagtttctagttgaaattggcttctagagacacactttatggccaataag...

Basic information

species Glycine max
transcript GLYMA07G05390.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatt-tgttttttaactctagtttctagttgaaattggcttctagagac----acactttatggccaataag-----------------------------
||||||||||||||||||||||||| || ||| |||  ||  | |||||   ||||||   |||  |||| |||||||| |||| |||      || |  |  |||     |||  ||       | | | | |   |  |   || ||| ||  |  ||| ||    |  | || ||||  |||                               
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCATgtaagttctctgttctgcagtgaaatataagtccataacaagatgtgattgtgtgtgttg--tggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcag

upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g36260.1 (Oryza sativa), 5'ss of exon 6
ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatttgttttttaactctagtttctagttgaaattggct--tctagagacacactttatggccaataag
||||||||||||||||||||||||| || || ||||| ||  | |||||  | || ||   |||| | ||||||||||| |||| |||  ||||  || | |  | ||   |   | |   | ||   |   | | ||   |||||  || | |  || |          ||||   ||     
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCTTGCCTGCTCCGACAGCTCGTGAAGCAATCCAGTACTCTATgtaagt-cctaaacattt-tgcagcattga---tgtgcatattaccatgttggatt---gttgatgttcgatgatccaatttgttgtcttattttcag----

upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os04g59040.3 (Oryza sativa), 5'ss of exon 7
------------------ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatt-tgttttttaactctagtttctagttgaaattggcttctagagac----acactttatggccaataag-----------------------------
                  ||||||||||||||||||||||||| || ||| |||  ||  | |||||   ||||||   |||  |||| |||||||| |||| |||      || |  |  |||     |||  ||       | | | | |   |  |   || ||| ||  |  ||| ||    |  | || ||||  |||                               
TTAACAATATGTTTTTAGACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCATgtaagttctctgttctgcagtgaaatataagtccataacaagatgtgattgtgtgtgttg--tggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcag

upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G01480.1 (Arabidopsis thaliana), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatttgttttttaactctagtttctagttgaaattggcttctagagacacactttatggccaataag
|||||||||||||||||||||| || ||||| |||||||||||||   |     ||||  ||||| |||| ||||||||||||| |   | |  || | | ||       ||  | ||||| ||||         |||  ||   |  |||   | |  |  ||   || |  |        
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAATGATTTTCTACAACCTGGTCCTGCTATTGAAGCCATTCAGTACTCAATgtaaacttttttttctttttaccttttttacataatttgcttttc--------ttttaagcaaatcttgatgtttgaaatca---ttcacag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8401989|gb|BE057623.1|BE057623
EST:     AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT                         GGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
genomic: AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtct ... tttgttgcagGGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
EST: gi|254315135|gb|GR830128.1|GR830128
EST:     AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT                         GGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
genomic: AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtct ... tttgttgcagGGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
EST: gi|254344222|gb|GR851025.1|GR851025
EST:     AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT                         GGATCTT-ATGCGGAGTATATTCTGCATACCTTAAG
genomic: AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtct ... tttgttgcagGGATCTTTATGCGGAGTATATTCTGCATACCTTAAG
EST: gi|254344223|gb|GR851026.1|GR851026
EST:     AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT                         GGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
genomic: AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtct ... tttgttgcagGGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
EST: gi|18040990|gb|BM309284.1|BM309284
EST:     AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT                         GGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
genomic: AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtct ... tttgttgcagGGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
EST: gi|209698574|gb|BW652427.1|BW652427
EST:     AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT                         GGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGGAT
genomic: AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtct ... tttgttgcagGGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
EST: gi|151399288|gb|EV269159.1|EV269159
EST:     AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT                         GGATCTTTATGCGGAGTATATTCTGCATACCTTAAG-CGATAGACAAGAAT
genomic: AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtct ... tttgttgcagGGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
EST: gi|5666812|gb|AI930848.1|AI930848
EST:     AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT                         GGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
genomic: AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtct ... tttgttgcagGGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
EST: gi|21995190|gb|BQ786718.1|BQ786718
EST:     AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT                         GGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT
genomic: AATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtct ... tttgttgcagGGATCTTTATGCGGAGTATATTCTGCATACCTTAAGGCGATAGACAAGAAT