Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTATGAGTACTTGCTCAAAGTTTGGATACAAGGGAATAAGACTTCAGCCGTAAAACATTATAGgtgagaataatgcaccaactttatcacattttatgccctttggattgatatgttatggatgaattcataatgatatccatgtcgttgtagtagacagtag...

Basic information

species Glycine max
transcript GLYMA07G02290.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 9
TTTTTATGAGTACTTGCTCAAAGTTTGGATACAAGGGAATAAGACTTCAGCCGTAAAACATTATAGgtgagaataatgcaccaactttatcacattttatgccctttggattgatatgttatggatgaat--tcataatgatatccatgtcgttgtagtaga-cagtag
 ||||||||||| ||||||||||||||| | |||||||| || || || ||||| ||||  ||||||| ||  ||| ||  | ||  | |   || | |  |||     ||| | || | |   || ||   | |  |  | |||  | |   |||| |  | |||   
CTTTTATGAGTATTTGCTCAAAGTTTGGGTGCAAGGGAACAAAACATCTGCCGTGAAACCCTATAGgtaag--taaagc-tcgacgctgt-gtatat-acacccaagtaattca-atatcagcaataaaggataaggactaaatctttcttaatgtattgaatcag---

upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 9
TTTTTATGAGTACTTGCTCAAAGTTTGGATACAAGGGAATAAGACTTCAGCCGTAAAACATTATAGgtgagaa--taatgcaccaactttatcacattttatgccctttggattgatatgttatggatgaattcataatgatatccatgtcgttgtagtagacagtag
 |||||||| || || |||||||||||||||||||| ||||| ||| | || || || ||||||||||||     ||   | || | |  ||     |  |    | || |  || ||  ||  | |||  || || |  |   |    |  ||||  |    | |  
CTTTTATGAATATTTACTCAAAGTTTGGATACAAGGAAATAAAACTGCTGCTGTGAAGCATTATAGgtgaatccctacacctcccattgaattctggtgaaatatcatttgtgtgctacattgggcatgtgtttatcaataccacatgatgattgtgattttgatt--

upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g00230.t01 (Vitis vinifera), 5'ss of exon 4
TTTTTATGAGTACTTGCTCAAAGTTTGGATACAAGGGAATAAGACTTCAGCCGTAAAACATTATAGgtgagaa--taatgcaccaactttatcacattttatgccctttggattgatatgttatggatgaattcataatgatatccatgtcgttgtagtagacagtag
 |||||||| || || |||||||||||||||||||| ||||| ||| | |  || || ||||||||||||     ||   | || | |  ||     |  |    | || |  || ||  |   | |||  || || |  |   |    |  ||||  |    | |  
CTTTTATGAATATTTACTCAAAGTTTGGATACAAGGAAATAAAACTGCTGATGTGAAGCATTATAGgtgaatccctacatctcccattgaattctggtgaaatatcatttgtgtgctacatagggcatgtgtttatcaataccacatgatgattgtgattttgact--