1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGgtatgattaaactaatgttgcttttaaagaagttttggtccagtggtaaatttggataaatcaatcgaatgcaatgtagtgattgatagccggtcatttt...
species | Glycine max |
transcript | GLYMA07G02170.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAG AGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGEST: gi|298197378|gb|HO044857.1|HO044857
genomic: CTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGgtatgattaa ... ttttatacagAGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCG
EST: CTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAG AGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGEST: gi|18039885|gb|BM308179.1|BM308179
genomic: CTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGgtatgattaa ... ttttatacagAGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCG
EST: CTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAG AGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCG
genomic: CTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGgtatgattaa ... ttttatacagAGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGgtatgattaaactaatgttgcttttaaagaagttttggtccagtggtaaatttggataaatcaatcgaatgcaatgtagtgattgatagccggtcatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA