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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGAAGAGGCACAACGAGCCATAAATGCTGCTCATGTGGAAGCAGAAAGCACTGAGAATGGTATTGGTGTTGTCAAGTTAATGGGTCGTCACAGTGgtaagtatcatttatatttcgtaatttacaatacaagcttagcctgatggaagttatatagagtagaagatctgaaagatgacctgtaagctgctgtgat...

Basic information

species Glycine max
transcript GLYMA07G01710.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01710.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 5'ss of exon 9
GCTGTTGAAGAGGCACAACGAGCCATAAATGCTGCTCATGTGGAAGCAGAAAGCACTGAGAATGGTATTGGTGTTGTCAAGTTAATGGGTCGTCACAGTGgtaagtatcatttatatttcgtaatttacaatacaagcttagcctgatggaagttatatagagtaga---agatctgaaagatgacctgtaagctgctgtgat
|| ||||| ||||| ||||| || ||||||||||||||||| ||||| | |||| | ||||||||||| ||  | || ||| |||||||||| |||||||||| || || |    |    |  || |        |    | | | ||         ||| | |      |  || | |  ||    | || |||  | |   
GCAGTTGAGGAGGCCCAACGTGCAATAAATGCTGCTCATGTAGAAGCTGGAAGCGCCGAGAATGGTATAGGCCTCGTAAAGCTAATGGGTCGACACAGTGgtatgtttcttggccacagtgatatgtcgtgctggaatgaaacattattagcccatcatatacttaggtcaattcagcacaatagtttctatgctaatat---

upper sequence: GLYMA07G01710.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G443985_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAAGAGGCACAACGAGCCATAAATGCTGCTCATGTGGAAGCAGAAAGCACTGAGAATGGTATTGGTGTTGTCAAGTTAATGGGTCGTCACAGTGgtaagtatcatttatatttcgtaatttacaatacaagcttagcctgatggaagttatatagagtagaagatctgaaagatgacctgtaag--ctgctgtgat---
|| || || ||||| ||||| || |||||||||||||||||||| || | |||  ||||||||||||| ||| |||||||| |||||||||| ||||||||||||  ||    | |      |||  |  || | |   ||    |||    || | ||| |   |   ||     |  | ||   | ||   | || || |   
GCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttctacgagaggcg--aataaattatgctaatata---cgatatctgtcaaatatatgtgtcaattaattaactaactcttgagtatttctctgctaat

upper sequence: GLYMA07G01710.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAAGAGGCACAACGAGCCATAAATGCTGCTCATGTGGAAGCAGAAAGCACTGAGAATGGTATTGGTGTTGTCAAGTTAATGGGTCGTCACAGTGgtaagtatcattta-----tatttcgtaatttacaatacaagcttagcctgatggaagttatatagagtagaagatctgaaagatgacctgtaagctgctgtgat
|| ||||| ||||| ||||| || ||||||||||||||||||||||| | |||  ||||||||||||| ||| | |||||| ||||||| || ||||||||||||  ||  | |      | |  ||   |   || | | | |   | |||||   || |  |  |   |   |      |  |     ||| |   |||    
GCAGTTGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAAGCTGTAAGTGCTGAGAATGGTATAGGTCTCGTCAAGCTAATGGGCCGGCACAGTGgtaagcttctatgagagaccaatatgtggctagtaacatatgat--acttgatgcctgtcaattgtatgtgtcaactaactaactcttgggtatgtatctgc---

upper sequence: GLYMA07G01710.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S327_30V6.1 (Physcomitrella patens), 5'ss of exon 9
GCTGTTGAAGAGGCACAACGAGCCATAAATGCTGCTCATGTGGAAGCAGAAAGCACTGAGAATGGTATTGGTGTTGTCAAGTTAATGGGTCGTCACAGTGgtaagtatcatttatatttcgtaatttacaatacaagcttagcctgatggaagttatatag-agtagaagatctgaaagatgacctgtaagctg-ctgtgat----------------------------------------
||||| ||||| ||||||||||| || ||||| |||||||||||||||||||| ||| | |||||| |||| || |||||  | ||||||||| ||||||||||   ||    ||   ||| |    || || |      || ||  |  |    || |   | |   ||| ||  |  ||||    | || |  |  || |                                        
GCTGTGGAAGAAGCACAACGAGCAATCAATGCAGCTCATGTGGAAGCAGAAAGTACTCATAATGGTGTTGGGGTGGTCAAACTCATGGGTCGTTACAGTGgtaatgttctgacattactcgaatcgaaccattctgttgcagacttttctacaacatttgacaatgatagaactttac-atgatgattgagttttccatgtttgggaatcaaattatttattgatgcggttcatgtgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285282|gb|BE022841.1|BE022841
EST:     GTCGTCACAGTG                         GGTTTATATCTATGTATGCAACTCTCGCCAGCCGAGATGTGGATTGTTGCT
genomic: GTCGTCACAGTGgtaagtatca ... aatcatgcagGGTTTATATCTATGTATGCAACTCTCGCCAGCCGAGATGTGGATTGTTGCT