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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccgtttggaaacttagtctccttttctttcaatttaaattttttttcttctagtttgtagtttgtactaaagtgtctttctttgctgcag

Basic information

species Glycine max
transcript GLYMA07G01660.5
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01660.5 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02940.t01 (Vitis vinifera), 5'ss of exon 10
CAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccgtttggaaac-ttagtctcctttt--ctttcaatttaaattttttttcttctagtttgtagtttgtactaaagtgtctttctttgctgcag--
|||||||||||||||||||||||||||||| ||||| || ||||| | |||||| || |||||||| |||||||||||||||||||| || | |        ||||   || |||  | || ||| |||    | |||||   |||||        | | ||  | | | ||      |  |  
CAAATATGACCTTTACAGCAAGAGCAAAGTCCGAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactgctctattttgttagaacccatttgacattgaatataaggagtgtttct--aagttttctaacacttcaaatttttttatcaaaatagttgtt

upper sequence: GLYMA07G01660.5 (Glycine max), 5'ss of exon 8
lower sequence: EFJ20873 (Selaginella moellendorffii), 5'ss of exon 9
CAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccgtttggaaacttagtctccttttctttcaatttaaattttttttcttctagtttgtagtttgtactaaagtgtctttctttgctgcag
||| ||||||||||||||||||||||||||  || | || || |||   |  |||||||| || ||||| |||||||| ||||| |||            || |||   || ||  ||| ||  | |    |     |    | | |  | | | ||     |                
CAAGTATGACCTTTACAGCAAGAGCAAAGTCAGAGTCGATGTGGAAGCCGCAAAACCATATTACCTCTCACTCATTGACAAGgtgagtt-----------ctaagttctctctttgttctatcaagaacactcaaaatgggatct-tgatctcttcttggcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311639|gb|FK003556.1|FK003556
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAA-G                         TACTTCC-TGCAA-GCTGA
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGA
EST: gi|15661860|gb|BI699231.1|BI699231
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|9984916|gb|BE659024.1|BE659024
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|192315625|gb|FK007453.1|FK007453
EST:     GAATTGACGTTGAAAGGGTCAA-CCATACTATCTCTCC-TCAT-GAAAAG                         TACTTCCCTGCAA-GCTGAAGTGGTGAAGAGT-AATTGGAGCCATGA-GTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|31457327|gb|CD399355.1|CD399355
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|192295840|gb|FG992636.1|FG992636
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|6964484|gb|AW433177.1|AW433177
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|163921205|gb|EH039507.1|EH039507
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|192315626|gb|FK007454.1|FK007454
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGA-GTGGTGA-GAGTTA-TTGGAGC-ATGA-GTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG