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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAGgtaactgtgtctatttcttggtaactgaattgaatgcaattgtggcagtatctcacgattgatacttatattgtttaaaaaatgtggcagatttaaatta...

Basic information

species Glycine max
transcript GLYMA07G01480.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01480.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02500.t01 (Vitis vinifera), 5'ss of exon 8
GATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAGgtaactgtgtctatttcttggtaactgaattgaatgcaattgtggcagtatctcacgattgata-----cttatattgtttaaaaaatgtggcagatttaaatta-----------------------
|||||||| |||||||||||||||||||||||||| || |||||||| || ||||| ||||| || |||||     || |  || ||| |    |  |  ||  ||||    |   | | |||  |||| ||     ||  | ||||    | |    ||   ||   ||| |                       
GATGCTGAGGAATGTTGGACACAACTTTTATACACTCTTTCTCAGTCACTTAGATCACCTGGTTCCAGgta-----gtttgctttttgttggtagggtgtaaaacaatgcatgtgat-tttcaaaattgttagcctgctctttttgtcatcatatctaggttaatgctaatcatactctgtaatgttcacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274686|gb|BF325023.1|BF325023
EST:     ACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAG                         TGAAAATCCCGATGCTGTGAAGGCCCTCTTTGGCATAGAACTTATTAGCAG
genomic: ACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAGgtaactgtgt ... ttattttcagTGAAAATCCCGATGCTGTGAAGGCCCTCTTTGGCATAGAACTTATTAGCAG