Sequence
atgc intronic sequence ATGC exonic sequenceACCCTACACATTGTAATACATTGGCATATAGCAGCTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagctatcttttgcttatgttatttgttttcattatggcttacacccagcaatgttgaggttgatgggggaaattaaagggaagtagataatttgatt...
Basic information
species | Glycine max |
transcript | GLYMA07G01440.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGCTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagctatcttttgcttatgttatttgttttcattatggcttacacccagcaatgttgagg--ttgatgggggaaattaaagggaa-gtagataatttgatt---------------------------
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ACCCTACTCACTGTAATACATTGGCTTATAGTAGCTCAAAGGGCTCCATTCGACTTGTTGACCTGAGGCAGTCAGCCCTTTGTGACACTCATTCCCAAGTgtgagttttcatttgttactcatactctttttcaatattcaacatagtttatttggatgagcatctggtggattggcctgtcttgttcgtactattttttattatagctattcctattctatgtgtgtag
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGCTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagctatcttttgcttatgttatttgttttcattatggcttacacccagcaatgttgaggttgatgggggaaattaaagggaagtagataatttgatt----------------------------------------------------------------------------
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ACCCAACTCATTGTAATACACTGGCCTATAGCAGTTCAAAGGGTTCTATCCGACTCATTGATCTGCGACAATCAGCTTTGTGTGACAACCATTCCAAGATgttagtaattcat--cttatgccttttacctgcaacat----tttatccgtgtgtactggaggtagtcgtggacttcttttgacggttgggacttggggctgcataagattctctattctatactagtaatagaatgtcacaatatcagcatgagataacaagaacctttaaacag
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGCTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagctatcttttgcttatgttatttgttttcattatggcttacacccagc-aatgttgaggttgatgggggaaattaaagggaagtag-ataatttgatt-------------------
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ATCCTACTCATTGCAATACATTGGCGTATAGTAGCTCTAAGGGCTCCATTCGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgagcttttatttcacactaacatatactctacttggaga--atatcaagtgaatactgcccttctcaattatcctataagtttcgttgtactatttctatacctgttgtcttcttgtag
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G069631_T01 (Zea mays), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGCTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagctatcttttgcttatgttatttgttttcattatggcttacacccagcaatgttgaggttgatgggggaaattaaagggaagtagataatttgatt--------------------------------------------------
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ATCCAACTCACTGTAATACACTAGCATATAGTAGCTCAAAGGGTACTATTCGGCTTATTGATCTGCGACAGTCAGCACTGTGTGACAACCATGCTAAACTgttagtaaccccccttgaacttcagtaacatt-attgttgattagaa--ggcaatgcttagatttt---atcatttctaatggctacaaacattttaagtttatttattggtcatggtcttatctggtttaactggggcatcttgttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22525826|gb|BU084637.1|BU084637EST: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACT ATTTGAGGAACAAGAAGCCCCT
genomic: CGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagctatc ... ttctgtacagATTTGAGGAACAAGAAGCCCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCCTACACATTGTAATACATTGGCATATAGCAGCTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagctatcttttgcttatgttatttgttttcattatggcttacacccagcaatgttgaggttgatgggggaaattaaagggaagtagataatttgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa