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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGCTTCCAGAAGAGCCTCCTGCCATTGTGGAGGACAACCGGCCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGGCAAAgttgcatccttgtatttccttattttttttctctttattttag

Basic information

species Glycine max
transcript GLYMA07G01390.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 19
-----TTCAGCTTCCAGAAGAGCCTCCTGCCATTGTGGAGGACAACCGGCCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGGCAAAgttgc-------atccttgtatttccttattttttttctctttattttag-----------------------------------------------------
     | |   | |||   ||||| ||||| ||||||||||  ||  |||| |||||||||||||||||||| || ||||| ||  | |||    |  ||| ||  | |         ||| ||| ||   | | |   |   | | |   ||||                                                     
GTTCATGCGCATACCACCTGAGCCCCCTGCGATTGTGGAGGGAAAAAGGCCACCATCTTCATGGCCTTCCAAGGGTAGGATAGAGTTGCAAAATCTGAAGgtaagatagttcttctagtccatgttttaaatgaataaatgaatatgttccttagcattgagtttgtgttttagacttaaatccgatgatccgtttgatgtgtttcag

upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 7
-----TTCAGCTTCCAGAAGAGCCTCCTGCCATTGTGGAGGACAACCGGCCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGGCAAAgttgcatccttgtatttcctt------attttttttctctttattttag----------------------------------------------
     | ||  | |||  |||||| ||||| ||||||||||| ||  |||| ||| |||||||||||||||| || ||||| ||| | |||    |  | |  | |    || ||| || ||| ||      | | | || ||   || || |                                               
GTTCATGCACATACCATCAGAGCCCCCTGCAATTGTGGAGGAAAAAAGGCCACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAgtgagg--aaattcttctagttcttttaaatgactgtgttccttagtacttgattgaaaatacttaaatctgatgatgctttcttttcggtgggtttcag

upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 8
-----TTCAGCTTCCAGAAGAGCCTCCTGCCATTGTGGAGGACAACCGGCCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGGCAAAgttgc-atccttgtatttccttattttttttctctttattttag----------------------------------------------------------------------
     | ||  | |||   ||||||||||| |||||||| |  || || || |||||||||||||||||||| || ||||| ||  | |||    |  ||| || |  || ||   |  | ||| |   ||   |  | | | |  |||                                                                      
GTTCATGCACATACCATCTGAGCCTCCTGCAATTGTGGATGGAAAGCGACCACCATCTTCATGGCCTTCCAAGGGTAGGATAGAGTTACAAAATCTCAAGgtaaggaagctattaatcaagttcatctcttaaatgatgtgtctcatagcaacctcttgaaagaatgctctggtgacaatacttaaaagccgacgattctgtcttctggttggtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405476|gb|EV275290.1|EV275290
EST:     TCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAG--A--                         TA--
genomic: TCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGGCAAAgttgcatcct ... tttattttagTACC