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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGgtaatgcagtgctttcatctctgtatattgttattgaattgttatagacttcttttctacctttgctttactcttttcctctgcag

Basic information

species Glycine max
transcript GLYMA07G01230.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 5'ss of exon 8
ACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGgtaatgcagtgctttcatctctgtatattgttattgaattgttatagacttcttttctacctttgctttactcttttcctctgcag
|||||  | ||||||||||| ||||| ||  |||||||||||||||||||||   || |  |   |  || |    |  |    | |||  |||  ||  |   |    |||| |||  ||||       ||||
ACACCGTTGGAAAATTTAGAGCCTGTCTTAAGAGAAGATATTCAGAAGgtaaaagag-gagtgagtgactttcagctaattccaagttg--ataagctgatcaccg--ttttgttttgttcttcattgtggcag

upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 8
ACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGgtaatgcagtgctttcatctctgtatattgttattgaattgttatagacttcttttctacctttgctttactcttttcctctgcag
|||||||| |||||||||||||||||| |  | |||||||| |||||||||| | | |  ||   ||  ||| |||| ||||| |      ||    |  |  | |     ||  || || ||    | |||||
ACACCACTGGAAAATTTAGAACCTGTTCTAAGGGAAGATATCCAGAAGgtaaagaatttgttgtttccttgtttatt-ttattaa----ccatgagttgttgattttgtaatgtgtt-cttttactgtatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704689|gb|BW656667.1|BW656667
EST:     ACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAG                         ATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGT
genomic: ACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGgtaatgcagt ... tcctctgcagATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGT