1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTTTAATGAGAAGCAGCAGCAGCAGAACTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTGAAATAAGAAAGAAAGCTGAAGCTGTCGATAGgtatctgtttaaattcttgctgtggataggtagtttttggattattagacatcatttggcttaagtatatgtttagtctgtatgtatatatgtctgatgc...
species | Glycine max |
transcript | GLYMA07G00820.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCTGTACTCTTGTCAGCTGAAACAAGAAAGAAAGCTGAAGCTGTCGATAG GTTCTGCAAGCCGATTATGGCAACACCAAGGCCAACCAAGGCGACTACTCCEST: gi|24205508|gb|BU964761.1|BU964761
genomic: CCTGTACTCTTGTCAGCTGAAATAAGAAAGAAAGCTGAAGCTGTCGATAGgtatctgttt ... ttttgaatagGTTCTGCAAGCCGATTATGGCAACACCAAGGCCAACCAAGGCGACTACTCC
EST: CCTGTACTCTTGTCAGCTGAAATAAGAAAGAAAGCTGAAGCTGTCGATAG GTTCTGCAAGCCGATTATGGCAACACCAAGGCCAACCAAGGCGACTACTCCEST: gi|192316977|gb|FK006148.1|FK006148
genomic: CCTGTACTCTTGTCAGCTGAAATAAGAAAGAAAGCTGAAGCTGTCGATAGgtatctgttt ... ttttgaatagGTTCTGCAAGCCGATTATGGCAACACCAAGGCCAACCAAGGCGACTACTCC
EST: CCTGTACTCTTGTCAGCTGAAACAAGAAAGAAAGCTGAAGCTGTCGATAG GTTCTGCAAGCCGATTATGGCAACACCAAGGCCAACCAAGGCGACTACTCC
genomic: CCTGTACTCTTGTCAGCTGAAATAAGAAAGAAAGCTGAAGCTGTCGATAGgtatctgttt ... ttttgaatagGTTCTGCAAGCCGATTATGGCAACACCAAGGCCAACCAAGGCGACTACTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTAATGAGAAGCAGCAGCAGCAGAACTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTGAAATAAGAAAGAAAGCTGAAGCTGTCGATAGgtatctgtttaaattcttgctgtggataggtagtttttggattattagacatcatttggcttaagtatatgtttagtctgtatgtatatatgtctgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG