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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacag

Basic information

species Glycine max
transcript GLYMA06G46230.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G46230.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 9
CAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgaga-----aaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacag---------
||||||| ||||| | | ||  ||  |||  ||  || ||  |  |||| |||||||||||||||||||| ||||||||| |  | |||| ||      | ||| ||||   |||| ||  |||    |  | |     |  |||  | ||   ||   || ||||     ||||||   |           
CAACACTTGGACAGATTTTATCTAATCATGCATTGAAGCCCAGAGTATATATTGGATGCATGAAATCTGGACCTGTCCTAACTGAGAAgtaagtgcatcacatggttttaactgttctttctga--caatgtctcctttccttttctcatgcc-ctcaaaatttgctaagttttgttaacccttgtctccag

upper sequence: GLYMA06G46230.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 7
CAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaaatgatttt--ctttgtttttattgaattgaattattaaagct-ctttgacttgttgcttctaacttgccctactttgttgcacag
|||| || ||||| | |||    |  |||  ||  || ||  |  | ||||| ||||||||||||||||| |||||| ||||| |||||| ||   ||  | |   |   ||     |    |     || |||   | ||   | ||||||   |    |||  || |  |      |||
CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagcttatcttgtgggcagagtccaggtctcttgaggatagtaattttgctgaaagttgttgacacatgtttgtgcttccctccactccag

upper sequence: GLYMA06G46230.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G007185_T01 (Zea mays), 5'ss of exon 8
CAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtga-gaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacag
||||||| ||| | |   ||   |  |||   ||||| ||  || ||||||||||||||||||| ||||| |||||||| ||  | |||| | ||||| || | |||||  ||   | | ||| |      ||    ||||  |  |||| | | |  |     | ||  | ||  |||
CAACACTTGGAAATATCTTATCCAAACATATTTCAAAGCCCAGGGTATACATTGGATGCATGAAGTCTGGCCCTGTCCTCTCTGACAAgtaaagaaaaagagtctcttttgttcattagtatttag--gacaacatgcttttgccagttgttacaa--tgagattgct--gctgtccag

upper sequence: GLYMA06G46230.2 (Glycine max), 5'ss of exon 8
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 8
CAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacag
|||| || ||  ||||||| ||||| || ||   |||||||||| | || ||||| |||||||||||||| |||||||| || |||||||   |||     || |  | |  |  || |  | |||| |  |  ||  || | |  |   |  |   | |  |               
CAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAgt---aaagcatcttccagtttcctccttcatatcaattttgtattcttgttaagtcatctttgttttatggagcag-------------