1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGATCAGAGTAGAGCAAAAAGGAAAATGGCATTATCTTCAAAGAAACTTGAGAAGAATGGCCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAGgtaattatacaatattttcttctatgaaaaaatatcagcgcttttaaatgctattggatattgtaattctatatattactttctgtgaacatcttaactt...
species | Glycine max |
transcript | GLYMA06G43930.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGAAGAATGGCCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAG GTTGAGCGTGAGGACGCTGGTGAAAGACAGAGGATGGTACAATAGTTGCATEST: gi|51335751|gb|CO979617.1|CO979617
genomic: AGAAGAATGGCCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAGgtaattatac ... ttgttttcagGTTGAGCGTGAGGACGCTGGTGAAAGACAGAGGATGGTACAATAGTTGCAT
EST: AGAAGAATGGCCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAG GTTGAGCGTGAGGACGCTGGTGAAAGACAGAGGATGGTACAATAGTTGCATEST: gi|6726040|gb|AW310439.1|AW310439
genomic: AGAAGAATGGCCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAGgtaattatac ... ttgttttcagGTTGAGCGTGAGGACGCTGGTGAAAGACAGAGGATGGTACAATAGTTGCAT
EST: AGAAGAATGGGCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAG GTTGAGCGTGAGEST: gi|193324432|gb|FK292670.1|FK292670
genomic: AGAAGAATGGCCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAGgtaattatac ... ttgttttcagGTTGAGCGTGAG
EST: AGAAGAATGGCCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAG GTTGAGCGTGAGGACGCTGGTGAAAGACAGAGGAATGGTACAATAG
genomic: AGAAGAATGGCCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAGgtaattatac ... ttgttttcagGTTGAGCGTGAGGACGCTGGTGAAAGACAGAGGA-TGGTACAATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCAGAGTAGAGCAAAAAGGAAAATGGCATTATCTTCAAAGAAACTTGAGAAGAATGGCCTTGGTTCTAAATTAAAGAAGACAAGGGTACTTGTTGAGgtaattatacaatattttcttctatgaaaaaatatcagcgcttttaaatgctattggatattgtaattctatatattactttctgtgaacatcttaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaaa