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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCATgtaagtggtgtttgttatattttacttactttcttttccctccttcagttgcttgtgtaaaaaacattgggttgggtatgcttctcaaatcccacctcag...

Basic information

species Glycine max
transcript GLYMA06G43820.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 8
ATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCATgtaagtggtgtttgttatattttacttactttcttttccctccttcagttgcttgtgtaaaaaacattgggttgggtatgcttc-tcaaatcccacctcag--
||| || ||||  | || ||| |||| ||||||||||| ||||| || |||||||||||||| || || || |||||  ||||||| |||||||||||||||||| |       | ||   ||   |      | | |||  ||   || ||  | |      |||||   |   |    ||  | |||   ||        
ATTTTGACTGCCCTTCCTACAATTGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATGATTCACCACTGTCTGGCCGCGATGGCACTCATgtaagtagcaaacaat-taacctagacatcaaagtgttcctattt--attcctcatattgttttcattgtcctttttgcttttgatgaaaattcatgcatatt

upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G128688_T01 (Zea mays), 5'ss of exon 8
ATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCATgtaagtggtgt-ttgttatattttac-ttactttcttttccctccttcagttgcttgtgtaaaaaacattgggttgggtatgcttctcaaatcccacctcag-
||  ||  |||| |||| ||| |||| ||||| ||||| ||||| || ||||| ||||| || || || || ||  | |||||||| ||||||||||||||||||      |   |    | ||| | |   |   |  | | |||   || ||| |    |  | ||    ||| || |   | |   ||  |     |  
ATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaaataacttccctctacatcatacttaatggcgttcttttttttcttcttctgatcaaatc---ttgtgtctttctattggatttcctggaaca

upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 8
ATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCATgtaagtggtgtttgttatattttacttactttcttttccctccttcagttgcttgtgtaaaaaacattggg-ttgggtatgcttctcaa-atcccacctcag
 ||||| ||||  ||||||| ||||| ||||| || || || ||||||||||| ||| |||| || ||||| ||||| ||||| ||||||||||| ||||||||| |    | ||   || | |||  |   |  |  || |||  ||  | | |    ||    |||   ||   | ||  | | ||  | | || |   
GTTATGACTGCACTGCCCACTGTTGAGTTGGATCCCCCAACCATTTCCATGACCTTTAGTGTCAATGACTCTCCACTGGCTGGTCGTGATGGCACCCATgtaagttgaaaattttgctttcttctttgtcattaattacttctt-ggtaccatatccttaatgttttgttcttcaatctgggtgttaatgtgctactttg-