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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTGGCGTGCCCTCATGGATGAGATGGCTGTCATTGCTACAGAGGAGTATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattgttgaatacttcagtatagaaagatgtccttgaaaatctagcagtttaagtggcatatttacaaaaatgataatttagttagcatgattaa...

Basic information

species Glycine max
transcript GLYMA06G43050.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021780|gb|BM092814.1|BM092814
EST:     CCGTTTCGTTGAGTACTTCCGATGT                         GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
genomic: CCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: gi|11689391|gb|BF597067.1|BF597067
EST:     ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT                         GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: gi|17020614|gb|BM091648.1|BM091648
EST:     CCGTTTCGTTGAGTACTTCCGATGT                         GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
genomic: CCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: gi|298183910|gb|HO029123.1|HO029123
EST:     ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT                         GCGACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: gi|15204600|gb|BI427368.1|BI427368
EST:     ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT                         GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: gi|151404929|gb|EV274743.1|EV274743
EST:     ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT                         GCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCA
EST: gi|21255811|gb|BQ452699.1|BQ452699
EST:     ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGT                         GCGACACCTGAGCTGGAGTATGGAAGAATG
genomic: ATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTgtaagtattg ... taaactgcagGCTACACCTGAGCTGGAGTATGGAAGAATG