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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctctttgatattagtgttgccatgattgcagaatatatcttcagagatcattatttaggtgtcttcttgtag

Basic information

species Glycine max
transcript GLYMA06G42840.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023095|gb|BM094129.1|BM094129
EST:     CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
genomic: CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
EST: gi|11689096|gb|BF596772.1|BF596772
EST:     CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
genomic: CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
EST: gi|193687860|gb|FK628287.1|FK628287
EST:     CCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
genomic: CCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
EST: gi|193436613|gb|FK399498.1|FK399498
EST:     CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
genomic: CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
EST: gi|8401865|gb|BE057499.1|BE057499
EST:     CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
genomic: CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
EST: gi|208078317|gb|GD877529.1|GD877529
EST:     AAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAGAAGGAAATCCGTTGCATGAACCCAAATTA
genomic: AAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAG-AGGAAATCCGTTGCATGAACCCAAATTA
EST: gi|9819612|gb|BE555125.1|BE555125
EST:     CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
genomic: CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
EST: gi|193413366|gb|FK377363.1|FK377363
EST:     AGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAAGAAGGAAATCCGTTGCATGAACCCAAATT
genomic: AGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCG-AG-AGGAAATCCGTTGCATGAACCCAAATT
EST: gi|193432041|gb|FK393839.1|FK393839
EST:     CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGANAGGAAATCCGTTG
genomic: CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTG
EST: gi|208124192|gb|GD922000.1|GD922000
EST:     CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGA
genomic: CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGA
EST: gi|208078264|gb|GD877504.1|GD877504
EST:     CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
genomic: CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
EST: gi|13562800|gb|BG551020.1|BG551020
EST:     CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAG                         GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT
genomic: CATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctc ... cttcttgtagGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGgtgatgtctctttgatattagtgttgccatgattgcagaatatatcttcagagatcattatttaggtgtcttcttgtag

- - - - -  TGGAGA
- - - - - - GGAGAA
- - - - - - - - - - -  GGTGGA