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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGgttcagagacaaacgaggcaaattgcatttttctctctcatcgatttattaattatcattgatatataattgttactgagttccttttatttgatttttaaaaatgttacactagaagatattgcttttgcatacctttttgatag

Basic information

species Glycine max
transcript GLYMA06G37080.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g52640.3 (Oryza sativa), 5'ss of exon 5
AACTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGgttcagagacaaacgaggcaaattgcatttttctctctcatcgatttattaattatcattgatatataattgttactgagttcc--ttttatttgatttttaaaaatgtta--cactagaagatattgcttttgcatacctttttgatag
|| || || ||  | ||| ||||||||||||||||||||||||| ||||||||||| |||| |  ||   |   | ||   ||   |||   |    |  |||   |  | | | | | ||   | |      |   | ||||    || | ||  || | |                               
AATTTTGTTGGACTTTCTATATCTGATGGTTACATTGCTACTGGCTCAGAGACAAATGAGgtatgttttctaagtttccacca--aattctctgccgactatttgaaggttaatttcaatgtcatacagcgacaccagcttttgtgcaaagctaatcattgg-------------------------------

upper sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G061602_T01 (Zea mays), 5'ss of exon 6
AACTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGgttcagagacaaacgaggcaaattgcatttttctctctcatcgatttattaattatcattgatatataattgttactgagttccttttatttgatttttaaaaatgttacactagaagatattgcttttgcatacctttttgatag
|||||||| ||  | ||  ||||||||||||||||||||||||| || || ||||| |||| |   ||||||  | |  || | |  |  |  || |    | || ||   | |  || | || |    |     |   ||||   |  ||  |  | ||   || |                      
AACTTCGTTGGTCTTTCCATATCTGATGGTTACATTGCTACTGGCTCTGAAACAAATGAGgta---tgcattcct-tagctaagct-tccacaaacttgtctggacatcggactcgtagttagat----tggccaggactttacctacctttaagcaaaaatcataggg--------------------

upper sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0014g02660.t01 (Vitis vinifera), 5'ss of exon 7
AACTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGgttcagagacaaacgaggcaaattgcatttttctctctcatcgatttattaattatcattgatatataattgttactgagttccttttatttgatttttaaaaatgttacactagaagatattgcttttgcatacctttttgatag
||||| || || ||||||||||| ||||||||||||||||| || |||||  |||| |||| |  |   || |    |   |     |||||||   |  | |||| | | ||  ||||||      |||  || | ||  | | | | ||        |  |  | |                     
AACTTTGTAGGTTTGTCTGTATCCGATGGTTACATTGCTACGGGCTCAGAAGCAAATGAGgtacttcatatatcaacccacctagtttttattaggaa--aatgatttttgatacttactg------tttctttgggttcctcacattattgttgggccacttcctac---------------------