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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAGgtatttttatagttactacaaaaatcatttatgttttctttgagttcatgctaacatgtttctttttattctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag

Basic information

species Glycine max
transcript GLYMA06G36130.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g32400.2 (Oryza sativa), 5'ss of exon 8
ACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAGgtatttttatagttactacaaaaatcatttatgttttctttgagttcatgctaacatgtttctttttattctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| ||||| ||||| || ||||||||||| |||||||||||||||||||| || || || ||||  ||||||  | |   |||  |    |||   |||     ||  |  | ||  | |  |  | | | |  | || |                                                                 
ACATTTGTTGGAACTCCCTTTTGGATGGCACCTGAGGTTATTCAAAACTCTGACGGGTACAATGAAAAGgtagctgtgc-gtttttctttaaacagtttgctgcttactgaactttttacccaagtctgtgtcctgatgcag---------------------------------------------------------------

upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G027756_T02 (Zea mays), 5'ss of exon 5
ACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAGgtatttttatagttactacaaaaatcatttatgttttctttgagttcatgctaacatgtttctttttattctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| ||||| ||||| || ||||||||||| ||||||||||||||||| || ||||| || |||| ||||||| || |  | || ||| | ||||      | ||     |||| |  |    ||| |  | |||  || |                                                                 
ACATTTGTTGGAACTCCCTTTTGGATGGCACCTGAGGTTATTCAAAATTCTGAAGGGTACAATGAGAAGgtacttgtgcatttgctaaataaatt-----tattagtagtgagcttttatagacaaggctgtttcaatgcag---------------------------------------------------------------

upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 8
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 5'ss of exon 9
ACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAGgtatttt-tatagttactacaaaaatcatttatgttttctttgagttcatgctaacat-gtttctttttattctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| ||||||||||| |||||||||||||| || || |||||||| ||||||||||| ||||||| |||||||| |    ||  ||||   |   ||| || |  |  |||    |   || |   |  |  | |  || ||  ||   | | | |  | ||| ||    ||   |        |  ||  |  | ||||  ||  ||
ACTTTTGTAGGAACCCCATTTTGGATGGCACCAGAAGTTATTCAGAACTCAGAAGGGTATAATGAGAAGgtatctcgcctatatactg--agcttcacttctcctagcttgacatgtgtgtttgtagaggctatacttgtttccttagcatatctaatattttttgccttcttttt----ctgttgctgggattgttgtc-atttag

upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 8
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 9
ACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAGgtatttt-tatagttactacaaaaatcatttatgttttctttgagttcatgctaacatgtttctttttattctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| |||||||||||||||||||||||||| || || || ||||| ||||| ||||| ||||||| |||||||| |  |  |  | ||  |     | ||| | | |||||  |||| |  | | | | | | | |    |  || | | | | || |     ||| ||        |  |  |   ||||  |||| |  |     
ACATTTGTAGGAACACCATTTTGGATGGCACCAGAAGTGATTCAGAACTCCGAAGGTTATAATGAGAAGgtatctcgtccatctgctgtag----cttttgt-tgttcttctagtttacccaatcttctgtgtataccctggctttacttgttttctagccctttctaattttgtcggtttctgcttctg-gtcttttccag----

upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 9
ACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAGgtatttttatagttactacaaaaatcatttatgttttctttgagttcatgctaacatgtttctttttat-tctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| ||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||| |||||||| | || || | ||       ||  |       ||| || ||   ||    || | || | | ||| | | | |    || | |    |    | ||    |                                
ACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAGgtatctatacagatgctc------tctctctctccctctgtgtgtgtgtgtgtgcacgcttgtctatatatatatatataattgtggggagttcaatcatattttg-------------------------------