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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTTACCCACTCTGTGGGTAATTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgcttctttctggtttgaactggaaaacatttgaagaattttgttttggaattctcttaaccattgaatatctctcttcacacctgttgctgatatttttatattatttttctacag

Basic information

species Glycine max
transcript GLYMA06G19250.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G19250.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g08560.t01 (Vitis vinifera), 5'ss of exon 8
CCTGTTACCCACTCTGTGGGTAATTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgcttctttctggtttgaactggaaaacatttgaagaattttgttttggaattctcttaaccattgaatatctctcttcacacctgttgctgatatttttatattatttttctacag
|| |||||||||||||||||||||||||| |||||||| ||||||||||| |  |||||  |||||||||  || ||||| ||||| || ||  | || |||||| ||   |   |||| |||   |     | | |||  ||||| |  ||||    || |   ||  |||     |     |||||    |                               
CCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCCGCACCCCTGTTTCACCGGTCAACTCATTGGgtaaaattaactgcatctgattt--tccatccatctttt--agaatatcattttcatgttataagaaatatttttcctgggctttcactgtag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496570|gb|EH224737.1|EH224737
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|208330897|gb|GE132674.1|GE132674
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|214007481|gb|DB987324.1|DB987324
EST:     AGCTCTGTCATCAGCATCCAAACACC-GCACTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: AGCTCTGTCATCTTCTTCCAAACACCTG-TCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|10253112|gb|BE820878.1|BE820878
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|11687638|gb|BF595314.1|BF595314
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|261497053|gb|GT185228.1|GT185228
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|208063771|gb|GD862863.1|GD862863
EST:     AAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: AAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|11687750|gb|BF595426.1|BF595426
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|13789795|gb|BG652386.1|BG652386
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|51337755|gb|CO981621.1|CO981621
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|7640292|gb|AW734597.1|AW734597
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|7639145|gb|AW733474.1|AW733474
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|254322816|gb|GR839837.1|GR839837
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|22523045|gb|BU081856.1|BU081856
EST:     CTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: CTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|193670611|gb|FK609065.1|FK609065
EST:     TTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: TTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|8404251|gb|BE059885.1|BE059885
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|26059361|gb|CA802275.1|CA802275
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|6725472|gb|AW309871.1|AW309871
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|208032805|gb|GD830464.1|GD830464
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GGACTGCTATAGCTCTT
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGGACTGCTATAGCTCTT