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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGGACCATTAACTGGACATATGAGCAATTGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATCATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagttaatctttgtatttactacattctatctctgttctttttttgtgtcttaccttgaacctagtgaaaattgagtttctagagttgcttctcttgt...

Basic information

species Glycine max
transcript GLYMA06G16690.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16690.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 9
CCATGGACCATTAACTGGACATATGAGCAATTGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATCATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagttaatctttgtatttactacattctatctctgttctttttttgtgtcttaccttgaacctagtgaaaattgagtttctagagttgct-tctcttgt-
|  || | |   |   | ||     |   |   | | |||||||| || ||||||||||| |||||| ||||||||||  |   ||| |||||||||||||| |||| | |    | |     ||||||||  | | |  ||  | | | | | | || |||  ||    ||      |||| | |   ||  | || ||  
CAGTGAAGCGCCACAAGAACCAGCTAAACACCACAATAGATTGGGACCAGCAGGCCTTGCATTGCATTATGCAAATATCATCAATCAGATTGATACTCTTgtaagttca-caaaatctgcttaacattctaaatttttaattactattt-tgtcatctagaagataaatcaaccaatatttcaacaccagcaatgtcatgag

upper sequence: GLYMA06G16690.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 8
CCATGGACCATTAACTGGACATATGAGCAATTGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATCATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagt---taatctttgt--atttactacattctatctctgttctttttttgtgtcttaccttgaacctagtgaaaattgagtttctagagttgcttctcttgt-
      |||  ||| ||||  | ||||  ||   ||||||||||| ||||| || ||||| |||||| |||||||||| ||  | ||||||||| | |||||||||   | |||| |||  |||| ||    | | | ||||    |  |||   |  | |  | |   |  || |  ||  |    || |    ||||| |  | 
----ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgtatatgatctctgttgatttccttatatttttttctgcatgtactttcatttattcagttattttcttgtatcttaggcagttacaa--acttctataatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990305|gb|BI315978.1|BI315978
EST:     CAGGCCTTGCTTTGCATCATGCAAATATAGTGCTTCAAATTGATACTCTT                         GTAGACAAATCCACTATGCCTGCAAATACAAAGGATGCATTATATCAAAGC
genomic: CAGGCCTTGCTTTGCATCATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagttaat ... tgaaactcagGTAGACAAATCCACTATGCCTGCAAATACAAAGGATGCATTATATCAAAGC