Sequence
atgc intronic sequence ATGC exonic sequenceACTCCAAATCCAGAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAGgttagctttgctttcttaactgcctatgtacctttttacatatttgtgctgaatattatttgttttgcacttgcag
Basic information
species | Glycine max |
transcript | GLYMA06G16570.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G16570.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 5'ss of exon 8
ACTCCAAATCCAGAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAGgtt-agctttgctt---tcttaactgcctatgtacctttttacatatt-tgtgctgaatattatttgttttgcacttgcag-----------------
||| ||| ||||| | ||| | |||| || |||||||||||||| || ||||| |||||| |||| |||||||| ||| |||| || | || ||||| ||| || | ||| | || | | ||| | | | ||| || || ||| ||||
ACTGTAAACCCAGATTTTGCTACATTAGACACGACAATTCTTGATGCTCTACATATAATGCATGATGGAAAGTTCTTGCATATTCCTGTTCTTGATCGAGgtagagccttattcatgtctctgcgtcccaaaaggacaataacaaagcatcttctgggactttattatttgatgcttgtcttacattttcctcaacag
upper sequence: GLYMA06G16570.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
ACTCCAAATCCAGAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAGgttagctttgctttcttaactgcctatgtacctttttacatatttg--tgctgaatattatttgttttgcacttgcag
|||||||| || ||||| ||| | | ||||||||||| |||||||| || || || |||||| | |||||||| ||||||||||| || || |||| |||| ||| || ||||| | | ||| | ||||| ||| | | | || || || |||| |||
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatg--caatgcattttttt-catgatgaaatatttaacatcatctgttgggcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9258573|gb|BE346720.1|BE346720EST: GCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAG ATGGAAATGCTATTGCTTGTTTGGATGTTTTGCAGATAACTCATGCTGCAA
genomic: GCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAGgttagctttg ... gcacttgcagATGGAAATGCTATTGCTTGTTTGGATGTTTTGCAGATAACTCATGCTGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTCCAAATCCAGAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAGgttagctttgctttcttaactgcctatgtacctttttacatatttgtgctgaatattatttgttttgcacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA