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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTGATTATGAAGACCCTGTAATATTATCATCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagtacttctttcaaaacatatctttagctttattccttgacaatgttgagtggttcctccattgtgtgttaatgaggagcaatgtatatgaagatta...

Basic information

species Glycine max
transcript GLYMA06G15180.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15180.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g43470.1 (Oryza sativa), 5'ss of exon 8
ATCCTGATTATGAAGACCCTGTAATATTATCATCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagta-cttctttcaaaacatatctttagctttattccttgacaatgttgagtggttcctccattgtgtgttaatgaggagcaatgtatatgaagatta
| || |||||||| |||||||||||  |||| ||||||||||  ||||| || ||||||||| |  | || |||||||||||| | ||||| ||||| ||||||||| |||| ||   | | | |||  |  |||     ||| |  ||||       |||  |  |||| | |||       |||    |          
ACCCAGATTATGAGGACCCTGTAATCGTATCCTCTAAGAAGAAAACAGTGGAAGACTTCTGCAACAGAATCCACAAGGACATGGTGAAACAATTTAAATAgtgagtatcttcatttgtatcttgtctgaatattt-----ttgtccctgtta------tccatctgtgtg-gctaactgctcacaaaacctgcag------

upper sequence: GLYMA06G15180.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G158021_T01 (Zea mays), 5'ss of exon 8
ATCCTGATTATGAAGACCCTGTAATATTATCATCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagtac----------ttctttcaaaacatatctttagctttattccttga----caatgt--tgagtggttcctccattgtgtgttaa----tgaggagcaatgtatatgaagatta---
| || |||||||| || ||||| ||  |||||||||||||||  || || || || ||||||||  | || |||||||||||| | ||||| ||||| |||||||| |          |  | | |     |  ||| |     ||   ||||    | ||||      |  ||  |   |||| | ||      |       ||    |   || |||    
ACCCAGATTATGAGGATCCTGTTATCGTATCATCTAAGAAGAAAACCGTGGAAGATTTCTGCGACAGAATCCACAAGGACATGGTCAAACAATTTAAATAgtgagtgccatataattatgttattattgtctcacttgaatggaatcttttgatcggctatgtaccagataattttttacttgtttttttggccctcgtctctaactgctccaaaaattgcag

upper sequence: GLYMA06G15180.2 (Glycine max), 5'ss of exon 8
lower sequence: AT4G39520.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCCTGATTATGAAGACCCTGTAATATTATCATCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagtacttctttcaaaacatatctttagctttattccttgacaatgttgagtggttcctccattgt-gtgttaatgaggagcaatgtatatgaagatta----------
|||| |||||||| || || ||||| |||||||| |||||||| ||||| ||||||||||||   || |||||||| |||||||||||||| || ||||||| |||| ||     ||||    || ||| | || || |||  |  ||||   |||||| | |      |  |   | | ||  | | ||  | | |||            
ATCCGGATTATGATGATCCCGTAATCTTATCATCCAAGAAGAGAACAGTAGAGGACTTCTGCATCCGGATTCACAAAGACATGCTTAAACAATTCAAGTAgtaagtaatt-----aaaa----tccttaacatt-tttcttttctctgttatatggttcttgctcaaaagcatcgctcatgaatact-taactaatgatctcctgatacag

upper sequence: GLYMA06G15180.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 8
ATCCTGATTATGAAGACCCTGTAATATTATCATCTAAGAAGAGGACAGTTGAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagtacttctttcaaaac----atat-ctttag---ctttattccttgacaatgttgagtggttcctccattgtgtgttaatgaggagcaatgtatatgaagatta
|||| ||||||||||| |||||||| |||||||| || | ||||||||||||||||||||||    | || |||||||||||||| ||||| |||||||||| ||| ||  || | || |    || | || |||    || ||| ||||| ||| || |   | |||| ||   |    |||  |  |  ||   | ||        
ATCCCGATTATGAAGATCCTGTAATTTTATCATCCAAAAGGAGGACAGTTGAGGACTTCTGCAGCAGAATCCACAAGGACATGCTCAAACAATTTAAGTAgtaagtgctctttcctaatcttccatgtactctagaattttgatttcttgagaatttttaa-agctccttcaccatcatctaagaacaaaaaaaaaaaatt-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481567|gb|BG510910.1|BG510910
EST:     GAGGACTTCTGCGATCTCATTCACAAGGACATGCTTAAACAGGTTAAGTA                         TGCTTTGGTCCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCA
genomic: GAGGACTTCTGCGATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTAgtgagtactt ... aatgatgcagTGCTTTGGTC-TGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCA