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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagcttttaatggaactaggattatagtgttgattgctggttgagtttaagcatcatatgaaatatttttcattattttggtgtactcatctaggttcaatactgtttgttgttggtttaatgattatgttgtaaaattttacattattttttatttattcatctag

Basic information

species Glycine max
transcript GLYMA06G14050.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343884|gb|GR857640.1|GR857640
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193554375|gb|FK511348.1|FK511348
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|27424740|gb|CA936260.1|CA936260
EST:     AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|6481922|gb|AW201193.1|AW201193
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193442856|gb|FK404234.1|FK404234
EST:     TACTTTCTAAGTCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: TAC--TC-AAG-CAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|21888556|gb|BQ741769.1|BQ741769
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193301047|gb|FK265554.1|FK265554
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTCGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|192319171|gb|FK009111.1|FK009111
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193423912|gb|FK390251.1|FK390251
EST:     CTTAACTTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTT-AC-TCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|9205289|gb|BE331513.1|BE331513
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193379415|gb|FK344861.1|FK344861
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|192319172|gb|FK009112.1|FK009112
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|9205272|gb|BE331496.1|BE331496
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193407747|gb|FK373109.1|FK373109
EST:     AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|254324021|gb|GR840446.1|GR840446
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193688938|gb|FK627887.1|FK627887
EST:     CTTACTCAAGCAGATGTCAAACACTTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTG
genomic: CTTACTCAAGCAGATGTCAAACAC-TTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTG
EST: gi|6481926|gb|AW201197.1|AW201197
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|193422971|gb|FK389282.1|FK389282
EST:     AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: AGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|151397590|gb|EV267463.1|EV267463
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|21677144|gb|BQ629495.1|BQ629495
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|8403307|gb|BE058941.1|BE058941
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|15661924|gb|BI699295.1|BI699295
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
EST: gi|254343883|gb|GR857639.1|GR857639
EST:     CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA
genomic: CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagct ... attcatctagGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgaagcttttaatggaactaggattatagtgttgattgctggttgagtttaagcatcatatgaaatatttttcattattttggtgtactcatctaggttcaatactgtttgttgttggtttaatgattatgttgtaaaattttacattattttttatttattcatctag

- - - -  GCAGAT
- - - - - CAGATG